Coffea arabica (coffee): 113709014
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Entry
113709014 CDS
T11342
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00040
Pentose and glucuronate interconversions
carb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
113709014
Enzymes [BR:
carb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
113709014
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
113709014
NCBI-ProteinID:
XP_027087566
UniProt:
A0A6P6UBF3
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Position
9c
Genome browser
AA seq
386 aa
AA seq
DB search
MASQGFHLLLIIITSLLSITFSTSQAAGPSASKPARKVMNIIDSCWRSRSNWADNRRALA
DCAIGFGKNAIGGKYGATYIVTDPSDNPGHPKSGTLRHGVVQTKPLWIIFARDMVITLKN
ELIVNSFKTIDGRGVKVEIAYGPCITIQHVSHVIIHGVSIHDCKPGKAGIVQSSSTHTGR
RGGSDGDGIDIFDSSYIWIDHCFLARCSDGLIDVIHASTAITISNNYFTQHDKVMLFGHN
DKNTEDNAIKVTVAFNHFGPGLVQRMPRVRLGYAHVANNRYDRWEMYAIGGSANPTIFSE
GNYFMAPDSPDAKQVTKREAKNGWKNWKWRSSKDKFMNGAYFVQSGYGNCSPGYNRYQNF
PVADGSLVPALTADAGPLRCTTNKAC
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggcctcccagggttttcatttgctactgatcatcataaccagtcttctaagcatcact
ttctccacctcccaagctgctggccctagtgcatctaagcccgccagaaaagtcatgaat
atcatagactcttgctggcgaagcaggtctaactgggcagataaccggcgtgcattggcc
gattgcgctataggcttcggcaagaatgcaatcggtggaaaatatggtgcaacatatatc
gtcacagatccatccgataatccgggacacccaaaatcgggcactcttagacacggtgtt
gtacagacaaaaccattgtggattatatttgctagggacatggttataactctgaaaaat
gagctgatagtaaatagttttaagaccattgatgggagaggggtgaaagtggagattgct
tatggaccatgcatcacaatacaacatgttagccatgtgattattcatggggttagcatt
catgactgtaagccagggaaggctggcattgtccagagcagttcaactcacacaggccgc
cggggtggctcggatggagatggcattgatatcttcgattcttcctatatatggattgat
cattgctttcttgcgaggtgcagcgatggcctcattgacgttatccatgcttccactgcc
attaccatttccaataactattttactcagcatgataaggtgatgttatttgggcacaat
gataagaacacagaagataatgccataaaagttacggtagccttcaaccattttggtcct
ggtcttgtgcagaggatgccaagggttaggctaggttatgcgcacgtggcaaataacagg
tacgatagatgggagatgtatgcaattggtggaagtgccaatccaaccattttcagcgaa
gggaactatttcatggctccggacagtcctgatgctaaacaagtgacgaagagagaggct
aaaaatggttggaaaaattggaaatggagatcctccaaagataaattcatgaatggagca
tattttgttcaatctggatatggaaactgttcccctggttacaatagatatcagaatttt
ccggtggccgatggttcgttggtacctgctttaacagccgatgcaggccccctacgctgc
actacgaataaagcttgttag
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