Coffea arabica (coffee): 113709310
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Entry
113709310 CDS
T11342
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00040
Pentose and glucuronate interconversions
carb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
113709310
Enzymes [BR:
carb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
113709310
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
113709310
NCBI-ProteinID:
XP_027087853
UniProt:
A0A6P6UBJ0
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Position
9e:complement(39137850..39139539)
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AA seq
401 aa
AA seq
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MANSSFLLLLSWILICCFSTFQAHKIHITPYKTTPTNFNPISPYYPQKKAMNIIDSCWRW
NPKWASNRQALADCARGFGNAALGGKNGAIYVVTDTSDDPINPKPGTLRYGATQDKPLWI
IFQRDMVLKLENELMVNSYKTIDGRGVKVEIANGPCITIEGVSHVIIHGISIHDCKPGKR
GMVRSSLNHVGERTGSDGDAIAVFASSNIWIDHCYLARCTDGLIDIIHASTSITVSNNYF
TQHDKVMLLGHQDGYIADKVMKVTVAFNHFGPGLVQRMPRVRYGYAHVANNRYDQWLMYA
IGGSSNPTILSEGNYFVASKNPDSKQVTKRDIEGGPGVWKNWKWRTSKDVFLNGAYFVQS
GLGSCSPLYSASQLFSVASGFLVPSLTSDAGPLNCHPGEAC
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattctagtttcttgctactgctttcatggatcttaatctgttgtttttcaacc
ttccaagctcataaaattcatatcactccatataaaactactccgacaaattttaatccc
ataagtccatattacccccaaaagaaagccatgaacataattgattcttgttggagatgg
aacccaaaatgggcttcaaatcgacaagccttggctgattgtgctagagggttcggaaac
gctgctttaggagggaagaacggcgccatatatgttgtcactgacacgtccgatgaccca
ataaatcctaaaccaggtacacttcgatatggcgctacccaagataaacccctatggatc
attttccaaagagacatggtcctcaagctggagaatgagctgatggtgaacagctataag
actattgatggaaggggtgtcaaagttgagattgccaatggaccttgcatcactattgaa
ggtgtcagccatgttattattcatgggatcagcatacacgactgtaaacctggaaaacgt
ggtatggtccgaagtagtctgaatcatgttggagagagaacgggttctgatggagatgca
attgctgtatttgcatcttctaatatttggattgaccactgctatttggctcgttgcacc
gatggtcttattgacataatccatgcatcaacttccattactgtctcaaacaattacttc
actcagcatgacaaggtgatgctgcttgggcatcaagatggctatattgcagacaaagtt
atgaaggtgacagtggcattcaaccattttggtcctggattagtccaaaggatgccaagg
gttaggtacggctatgctcatgtagcaaacaataggtatgaccagtggcttatgtatgca
attggtggaagctcaaatccaacaatattaagcgagggaaattactttgtagcttcaaaa
aatcccgactctaaacaggttaccaaaagagacattgaagggggtccaggagtgtggaag
aattggaaatggagaacctctaaggatgtctttcttaatggggcttactttgttcaatct
ggattgggaagctgctctcctctttattctgcatctcaattattttctgttgcttcagga
ttcttggttccttctttgacttcggatgctggtcctctcaattgtcatcctggagaggca
tgctga
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