Coffea arabica (coffee): 113710195
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Entry
113710195 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113710195
03015 mRNA surveillance pathway
113710195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113710195
03041 Spliceosome [BR:
carb03041
]
113710195
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113710195
Spliceosome [BR:
carb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
113710195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Cornifin
Motif
Other DBs
NCBI-GeneID:
113710195
NCBI-ProteinID:
XP_027088863
UniProt:
A0A6P6UG80
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Position
1e:48865761..48871379
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AA seq
795 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEYLVDMTKVKMDVMRPWIATRVTELI
GFEDEVLINFIYGLLDGKEVNGKEVQISLTGFMERNTGKFMKELWSLLLSAQKNASGVPQ
QFLDAKEEETRKKKAESDRIANEIRRKKEKESQELGQEGTKKTDHGNDISKDSDMGVHPT
SKHQPGGMLTGEKESVQRNGSRGRSRASRSPHSADHSPSTRGRRSRSISKSFSNSRSYSG
GRRRSTSLSASPRRRGRSSSSEMVYRSSPRRSLTPRGRRSPHRSFTPSRRRSSYYRQRSS
SRLRRRSPSPTRYRMRSPLRRRSRSPLRRRSRSPIWRRPRSPIRRSPPRGRSRSPLRHRS
SSARRRSPSPIRRNSLSPARYGSQSLMRQKYRRSSSTPPRRSPSPVMRRSRSPIRRRSPL
PIRHRSPSPIRRRSPSPIRRRSPSPVHRVLSSPVGRRSPMGRRRSPTPASHKSDSPQVSS
SPPPRRNIPSPIRRKSPRRQRRSPLQSPRERKRSREKYSPVHHAAPRNTVERPTNDRHRS
NSSERQSQSVSSDLNNSQRKVRRLSPSPNRSPASEADREPNLNEKRRENKSQGHQKKPAQ
RDSQMIKDALHGDKGKQSPVGETHRAVEKNQSYSNDTKINDRHFEAASKLARKVEHNDEN
ASVGSDSEESDRTRARVKDKRKKRRAERRRSESASESSYDSYEEERKEAKRKRKEEKKLK
KEDRRRRREERRRRKDERRAEKHKLKSKDAISSPSDAERNHGGHSDDDQSDKKKLEIELR
EKALESLRAKKSIGH
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggctttttccggggcacgtcggccgatcaggatactcggttctcgaacaag
caagctaagctgctgaaatctcagaaattcgctcctgaattggaatacctggtggatatg
acgaaagtgaagatggatgtgatgaggccgtggatagcaactcgggtgaccgagcttatt
ggatttgaagatgaagtgcttattaactttatttatggccttctagatgggaaggaggtt
aatggaaaggaggttcagatttctcttactggttttatggagagaaatactggtaagttt
atgaaggagctgtggtcattacttttgagtgctcaaaagaatgcaagtggtgtccctcag
cagttcttggatgccaaggaggaagagactaggaagaagaaggctgagtcagatcgaata
gcaaatgaaatccggagaaagaaagagaaggaaagtcaggaactggggcaagagggaact
aagaagacggaccatggcaatgatatctcaaaagattctgatatgggtgtacatcccact
tcaaaacatcagccgggtggaatgttaactggggagaaagagtctgtgcagaggaatgga
tcgcgaggacgaagcagggcctctagatctccacattctgctgatcattccccttctact
agagggaggcggtcaaggtcaattagcaagtcattctccaattcaagaagttactcaggt
ggaagacgcaggtcaacaagtttatctgcctctcctaggcgaagagggcgctctagttca
tcagaaatggtttaccgctcttcacctagacgatctcttactcctcgtgggagacgttca
ccccatcgttcttttactccatccaggcgcagatcatcttattataggcaacgatcatca
tcccgactgcgtcgtaggtctccatctcctactcgttatagaatgcgttctcctttgcgt
cgcagatcacgctctcctcttcggcgtagatcaaggtcacccatctggcgtaggccaagg
tcaccaattcgacgatctcctcctcgaggtaggtcccggtcacctttaagacatagatca
tcatctgcaaggcgtagatcaccatcccccattcgacgaaactcactatctcctgcaaga
tatgggtcacaatctctcatgaggcagaagtatcgacgatcttcatcaacaccaccaagg
aggtctccttctccagttatgcgcaggtctcgatctccaatccggcgtaggtctcctttg
ccaattcggcataggtctccatctccaattcggcgtaggtctccatctccaattcgccgt
aggtctccatctccagttcaccgtgtattgtcttctccagttgggcgtaggtcacccatg
gggcgaagaagatctccaactcccgcgagtcataaatctgattcacctcaagtatcgagt
tctcccccacctcgtcgcaacattccttcaccaatcaggaggaaatcaccaagaaggcag
aggagatcacctttgcaatctcctagagaaaggaagagaagtcgggagaagtactctcca
gttcatcatgctgctccaagaaatacggttgaacgcccaactaatgatcgtcatagatca
aactcatcagaacgtcagtctcaaagtgtctcttcggaccttaataattcacagagaaaa
gtgagaagactgtctccttcaccaaacaggtctcctgcttcagaagctgacagggaacca
aatttaaatgagaagagaagggaaaacaaatctcaaggtcatcaaaagaaacctgctcag
cgagattcacaaatgattaaagatgcattgcatggtgataaggggaagcaatcacctgtt
ggagagacacacagagctgttgaaaagaatcaatcttattcaaatgatactaagattaat
gatcgccattttgaagctgcttcaaagttggcaagaaaggttgagcacaatgatgaaaat
gcttctgtgggttctgactctgaggagagtgataggaccagggctagagtcaaagataag
agaaagaaaaggagggcagagaggcgaaggtctgagtcggctagtgaatcaagttatgat
tcttatgaagaagaaaggaaagaggctaagagaaagaggaaggaggagaaaaaattgaaa
aaggaggataggcgtcggaggcgggaggagcgtcgtagaagaaaagatgaaaggcgtgca
gagaagcataagctgaaatcaaaagatgctatttcttcaccttcagatgctgaaaggaat
catggtggtcattctgatgatgatcaaagcgataagaaaaagttagagattgagttgcga
gaaaaggccctcgagtcacttagggctaagaagagcattggccattaa
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