Coffea arabica (coffee): 113710303
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Entry
113710303 CDS
T11342
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113710303
03015 mRNA surveillance pathway
113710303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113710303
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113710303
mRNA cycle factors
P-body specific factors
113710303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
113710303
NCBI-ProteinID:
XP_027089031
UniProt:
A0A6P6UFN1
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Position
9e:complement(38155585..38168759)
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AA seq
1195 aa
AA seq
DB search
MEHPEDEPRSGGEHHEKHDDEESVARSEEFKKSVEAKMALRQSNMNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMEDLRSVNLSKFVSEAVAAICDAKLRSADIQAAVQIC
SLLHQRYKDFSPSLVQGLMKTFFPGKSGEDPEADRNLKAMKKRSTLKLLLELYFVGVIDD
SGIFVNIIKDLTSLEHLKDRDATQTNLSLLASFARQGRYLLGLPQTGQDVLEEFFKSLNV
MAEQKRFFRKAFQTYYDAAVELLQSEHVSLRQMEHENAKIINAKGELSDENASSYEKLRK
SYDNLYRGISALAESLDMQPPVMPEDGHTTRMSSGEDLSSQSAGKDSPVLEALWDDEDTK
AFYECLPDLRAFVPAVLLGEAEPKLNEQSPKTQDQSTDLAAEADQCQITRELADVSLDSG
SSQEDKGEKVKDKDERDKEKSKEIEKDKGKEKDAERKGESDKEKVKGLEGTSLDALLQRL
PGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDV
SSMLLQLLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFS
HHNIDVACNLLETCGRFLYRSPETTLRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCK
PPERSARVSKVRPPLHQYIRKLLFSDLDKSSIERVLRQLRKLPWSECDPYLLKCFMKVHK
GKFGQIHLIASLTAGLSRYHDDFAVAVVDEVLEEIRLGLELNDYGMQQRRIADMRFLGEL
YNYELVDSSVIFDTLYLILVFGHGTAEQDTLDPPEDCFRIRMVITLLETCGHYFDRGSSK
RKLDRFLIHFQRYILCKGALPLDIEFDLQDLFAELRPNMTRYSSVEEVNAALVELEEHER
VVATEKANIDKHSETGKSPSRTSSGVISLNGQSIANGTEENGELHDDIVGETDSDSGSGT
PERMGHHDEEDSDEGNHDEESETDEDYDDLVGPASDEEDEVHVRQIAAQVDPQEAAEFDR
ELRAIMQESLDSRKLELRARPTLNMMIPMNVFEGPTKDHLGKSTEGESGDEAIDEAAGGN
KEVQVKVLVKRGNKQQTKQMSIPRDCTLVQSTKQKEAAELEEKQDIKRLVLEYNDREEEE
LNGLGMQPLSWTQSAGSRVGNRGHAWEGHGRTTGSRGRHHYIHHSGGGMHYSRRR
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggaacaccctgaggatgaacctcgttctggaggtgaacaccatgaaaaacatgatgat
gaggaatccgttgctcgttctgaggaatttaagaagtctgtagaagctaaaatggcactt
cgtcagagtaacatgaaccctgaaagacctgactcaggttttcttagaacattggattcc
agcattaaacgcaacacagctgttattaaaaaacttaagcaaattaatgaagagcagcga
gaaggattgatggaagatttgcggagtgttaacttaagcaaatttgtcagtgaagcagtg
gcagctatttgtgatgcaaaacttagatctgcagacattcaagctgctgttcagatctgt
tctttgcttcatcagagatacaaagacttctcaccaagtctggttcaaggtctcatgaaa
accttttttcctggtaaatctggtgaagacccagaggcagacaggaatttgaaggccatg
aagaaacgtagtactttaaaacttctactggagctttactttgtcggagtcatagatgat
agtggcatctttgttaacattattaaggatctcactagcctagagcatttgaaggaccgt
gatgcaacacagacaaatctgtcccttcttgctagttttgctcgacaaggaaggtatctc
cttgggcttccgcagactggacaagatgttcttgaagagttttttaagagcctcaatgtg
atggcagaacagaaaaggttctttaggaaggcatttcaaacatattatgatgctgctgtt
gaactacttcaatcagagcatgtgtcacttcgccaaatggagcatgagaatgcaaagatc
ataaatgctaaaggtgaacttagtgacgaaaatgcctcttcatacgaaaaactgcgaaaa
tcatatgacaatctataccgtggcatctctgctttagcagaatcattggatatgcaacct
cctgtgatgcctgaggatggtcatacaactaggatgagttcaggggaggatttgtcatct
caaagtgctggtaaagatagtcctgtccttgaagctctctgggacgatgaagatacaaag
gctttctatgagtgcttaccagatctcagagcatttgttccagctgtattgttgggagaa
gcagaaccaaaattgaatgagcaatctcctaagacgcaagaccaatcaactgatttggct
gctgaagctgaccaatgtcagataacgcgagaactggcagatgtttctttggattctgga
tcttcccaggaagacaaaggtgagaaagtgaaggataaagatgaaagggataaagaaaag
agtaaagaaattgaaaaagataaaggaaaagaaaaggatgctgagagaaaaggagaaagc
gacaaggagaaagttaaaggtcttgaagggacaagtctggatgcgctgctgcagagactc
cctggttgtgtgagccgtgacttgattgaccagttgactgtggaattttgctatttaaat
tcgaagtctaataggaaaaagcttgtcagggctttgttcaatgtgcccaggacatcacta
gagttgttgccatattattctcgcatggttgccaccctgtcaacatgtatgaaggatgtg
tcttctatgcttttacagttgttggaggaagaattcaactttttgatcaataagaaggat
caaatgaacattgaaactaaaatccggaatatccgttttattggagaactctgcaaattc
aaaattgcgccagctgggcttgttttcagctgcttaaaggcttgtttagatgatttcagt
catcacaacattgatgttgcgtgcaatcttcttgagacgtgtggtcgtttcctttatcgt
tctcctgagactaccctgcgcatggctaacatgttggagatattaatgcgtttgaagaat
gtaaaaaatttggatcctcgccatagcaccttggtggagaatgcatattatttgtgtaag
ccaccagaaagatctgctcgagtttctaaagttcgtccacccctgcatcagtatatcagg
aaattgcttttctcagatcttgataaatcttcaattgagcgcgtgctgagacaacttcgg
aaactaccttggagtgaatgtgatccttaccttttgaagtgttttatgaaggttcacaag
ggaaaatttggtcagattcacctgattgcatcacttactgctggcttgagtcgttatcat
gatgactttgctgttgctgttgttgatgaggttttggaggaaatcagacttgggttagag
ttgaacgattatgggatgcagcaaaggcgtattgccgacatgcgttttctgggagaattg
tacaactatgaacttgtggattcatctgttatttttgatactctatacctgatactggtt
tttggtcatgggacagcagagcaagatacattggatccaccagaggactgctttcgcatc
aggatggtcatcacacttcttgaaacttgtgggcattattttgatcgaggttcatcaaag
agaaaacttgatcgattcttaatccatttccagagatacattctgtgcaaaggtgcatta
ccactggatattgaatttgacttgcaggatctatttgctgaattacgcccgaacatgact
cgatattcgtcagtcgaggaagttaatgcagctttggttgaacttgaggagcatgagcgt
gttgttgcaaccgagaaggcaaatattgacaagcattcagagactggaaaatctcctagc
aggactagttctggtgttatttctctaaatggacaaagcattgcgaatggtactgaggaa
aatggtgaactgcatgatgacattgttggagagacagacagtgattctggtagtggaacc
cctgagcggatgggtcatcatgatgaagaagattcagatgaagggaatcatgatgaggag
agcgagactgatgaggattatgatgacttagttggtcctgcttctgatgaagaagatgag
gtgcatgttaggcagattgctgcacaagtggatcctcaggaagcagctgaatttgacaga
gaactccgtgctataatgcaggagagcttggattcaagaaaacttgagttgcgggctcga
cctactctcaacatgatgatacctatgaatgtttttgaggggcctaccaaagaccactta
ggaaagagtactgaaggagaaagtggtgatgaggcaatagatgaagcagcaggaggaaac
aaggaggttcaagtaaaggttcttgtgaagcggggtaacaagcaacaaacaaaacagatg
tcgattcctcgagattgcacccttgtgcagagcacaaaacagaaggaagctgctgagctt
gaagagaaacaagacatcaaacggcttgttttagaatacaatgatagagaagaagaggag
cttaatgggctgggtatgcaacccctgagctggacccaaagtgcaggaagcagagtgggt
aacaggggccatgcatgggaagggcacggtaggactactggatcacgtggtcggcatcat
tatatacatcattctggtggagggatgcattacagcagaagaagataa
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integrated database retrieval system
