Coffea arabica (coffee): 113710326
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Entry
113710326 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113710326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113710326
Spliceosome [BR:
carb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
113710326
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
113710326
NCBI-ProteinID:
XP_027089074
UniProt:
A0A6P6UEU2
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Position
9e:complement(39590920..39596700)
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AA seq
671 aa
AA seq
DB search
MTELFLHFQENSLDNYTRKIAAQNWAFSCGANGKPKKVRITFHPLESRLTASPGSSSTPC
SSVLCSTHFSPVNSSNEKEISRNPGIGSKPYNLHRFSLSPFFTVFTMVENSSSKRQKIVE
QSSGSASASPPPSTVAFENPLLPLASYEDDDDEEDDKRGGNLNRVLSGGTGSEPNGNTHK
EEYDEEEDDDDTLMVGTRGKRSRAVEVRRDCPYLDTVNRQVLDFDFERFCSVSLSNLNVY
ACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEIVDPSLDDIRHVLN
PRFTREQVLHLDKNKQWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFL
IPENYQHSKSPLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGAQSDPVE
FMSWLLNTLHADLKGSKKSGSIIHQCFQGELEVVKESHSKPIVEKKVDGDAVINGNGVDT
GSEVHSSFTESTRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVR
PRMARMKYRVTKLPPYLILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPAPKQNE
RLRSKYDLIANIVHDGKPGEGSYRVFVQRKSEELWYEMQDLHVTETLPQMVALSEAYMQI
YEQQQQQQQQI
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagttatttttgcacttccaagaaaatagtctggacaattatacgagaaaaatt
gctgcacagaattgggccttttcctgtggagcaaacggtaagcccaaaaaggtccggata
acatttcatcctctcgaaagtcggctgacagccagcccaggttcttcctccactccttgc
tcttctgttttatgttctacacatttttctccggtcaattcatccaacgaaaaagaaatc
agtcgaaaccctggaattggatccaaaccctacaatcttcatcgtttctctctttcgccg
ttcttcaccgtttttacgatggtagagaattccagttccaaaaggcagaagatagtggag
caatcctctggttcggcgtcagcttctcctccgccgtctacggtcgcatttgagaatcct
ttacttcctctcgcttcgtatgaggacgacgatgacgaggaggatgacaagagaggaggg
aacctcaatagggttttgagcgggggcacaggatcagagccgaatggcaatactcacaag
gaagaatatgatgaagaagaagatgacgatgatactcttatggtgggaactcgtggaaag
cgcagtcgagctgttgaagtgagaagggactgtccttaccttgatactgttaatcgacag
gttttggattttgactttgagaggttttgctcagtttccctttccaatttgaacgtttac
gcatgtttagtttgtgggaagtactaccagggaagaggccaaaaatctcatgcatatact
cacagtcttgaagctggacaccatgtctacatcaatcttcggacagagaaagtttattgc
ctccctgatggatatgagattgttgacccatcattggatgacattcgacatgttcttaac
ccaaggttcaccagggaacaagttttgcaccttgacaagaataagcaatggtctagggca
cttgatggatcagattatctacctggaatggtggggctgaacaacataaaggaaacagat
tttgttaatgtcactattcagtccttaatgcgtgttactcctctgaggaacttttttctt
atccctgaaaactatcagcacagcaaatctccactagtccatcgatttggagagctcact
cgaaaaatttggcatgcaaggaactttaagggacaggttagtccacatgagttcttacaa
gcagttatgaaagccagtaagaaacggtttcgaattggtgcgcagtctgaccctgttgag
tttatgtcatggcttcttaatacactgcatgcagatctcaaaggttcaaagaaaagtggc
agcattatccaccaatgctttcagggagaactggaggtagtgaaagaaagccatagcaaa
cccattgttgagaaaaaggtagatggagatgcagtaattaatggtaatggtgtagatact
ggatccgaggtgcatagttcttttacagaaagtaccagaatgccgttcttaatgcttggt
ctagatttgccacccccgccactcttcaaagatgttatggagaaaaacatcatcccccag
gttccacttttcaacattctgaaaaagtttgatggtgagactgtgacagaagttgtgcga
cctaggatggcaaggatgaaatatcgtgttacaaaattgccaccttacttaattctccac
atgcgacgttttacgaagaataatttctttgtggagaaaaatcctacccttgttaatttt
cccgtgaagaacctggagctcaaggactacattccacttcctgcacccaaacagaatgaa
agactacgctccaagtacgatttgattgccaacatagttcatgatggtaaaccaggtgaa
ggatcataccgggtttttgtacagcggaagtctgaagaattatggtatgagatgcaagat
ctgcatgttacagaaactctcccccagatggtagcactgtcggaagcatatatgcagata
tacgagcagcagcagcagcagcagcagcagatttaa
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