Coffea arabica (coffee): 113710421
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Entry
113710421 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113710421
Spliceosome [BR:
carb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
113710421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
Motif
Other DBs
NCBI-GeneID:
113710421
NCBI-ProteinID:
XP_027089219
UniProt:
A0A6P6UFC0
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All DBs
Position
9e:complement(1488190..1516439)
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AA seq
1229 aa
AA seq
DB search
MYIDSEVLGEGLTSTGGAILSYSSALAAALPMDDEADKNSNAAAPHNPDEQAQAAAFHKR
VHEMVARDSRNFDSWTGLVEEVEGMCPDNLDLIALAYDSFLSMFPLCHWYWTKYTDHIIR
LSDAHKAVKVYERAVDSTPFSTGLWVDYCCFGMCFYEDPSDVRRLFKRALLFVRKDYFCH
ALWNQYIKYEFTQQHWGFLANIYLQVLKFPTEYLDRYYENFKQFVVGLDEEMKKHENCSA
DADAGSLPNHSAKLSEDEIIQVVEDLQNASNEALLRKAVNKYKLIGEIFYQKAKELDEKI
KNFETNIQRRYFDTAPLDDAQLKNWHHYLDFIEKQDDFDWALQLYERCLITCTNYPEFWM
RYVEFMESKGGRELANSALQRATQVFLKFFQGVPEIHLFNARYKERIGDVNAAVAAFLNS
DVLSDSLPRHIVELANMRRRLGNLEAASDTLKNAINMAEKKQKLHSLPSLFIHYSRLKYM
ITGSAEAARDALIDGIQRIPHCSKLLEELIKFAMMHEGAKQVDLIDSIIGHAISPSSEGT
SGLALKDREHVSSLFMEFVDLCGTVHDISKAWNRHIQLFPQLVRNNLIDKELDLGKCLSD
QMLVIRESGSCAFPNLLDEDQHSNQPVEEQVSLLPANHASKDELVSADQTPQKCNNTVDC
ERGEHLSTQEADKRNFGAFEVDEVAHHSMLQSADDTPRVMESMDNLTEQHKENVPAQMTP
ASVQISSKATSEPNALTSNSNCQSSATVILESAEEHSCPMNMQDQKHKQHPNPVSFGNLS
LNSQEKASQKLIAMASDEHDAASDISKSTDCLNANSPPNRTAAADSVEVQESPDETRLAG
LLSSATQQVSTPTKMHPSSMLSPSAGGECHQMLKGTVSEGKSSEMHLPTTHPYPQHSLVW
KQGDHAEVYCKENAPQENLASKHVWLVNSMPDMSSSSTNPSHIATDHGQTLSQTLPYQQH
LLQQQYQQQLVQMLPLHHQHQQSYLHHQQLLPQQQQQHQQQASSWQQQQYHQQHQQLLSL
PYQGLQIQQQMPHLQQIHQQVQPHYHQSAEQLQLQHAQQLQQQFAPVPEQQLQLYHQSQK
LAYDMHQQGYQGHAAQVHQTLFQQYQLYQQGYGQMLQQHQQHPYHYNQMLLQQPPQHQQQ
DEQQEHHQKRASNQDLSQGISQHLWGQQTAPQGADSTLLRHSSPQSMAQLNTERQSGLVA
SSHQQPFHGISPSRNRDTPESAASSHHGR
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgtatatagactctgaagtattgggagaaggattaacaagcaccggaggagcaattttg
agttattcttctgcattggcggccgctttacccatggatgatgaggcggacaagaattct
aatgctgctgcaccacataatccagacgagcaagctcaagcagctgcttttcataaaaga
gtacatgaaatggttgctagagattcccgtaattttgattcttggactggactagttgag
gaggttgaaggaatgtgccctgataatttggatctcatcgcattagcatatgattcattt
ttatcaatgttccctttgtgccattggtattggacaaagtatactgatcacatcatacgg
ctatcagatgctcataaagctgttaaagtttatgaacgtgcagtggattcaacaccattc
tccactggcttgtgggtcgactattgttgttttggcatgtgtttctatgaggatccatct
gatgttcgtaggttgttcaaaagagccctattgtttgtgcggaaagattacttttgtcat
gccttatggaatcagtacataaaatacgaatttactcagcaacactggggctttcttgca
aatatttacctccaagttctcaagttccctacggagtatttggatagatattatgagaat
ttcaaacagtttgttgtgggactggatgaggagatgaagaagcacgagaactgcagtgca
gatgcagacgctggatctctgccaaaccattcagctaagttgtctgaagatgaaattatt
caagtcgttgaggacttgcagaatgcttctaatgaagccctcctacgaaaagcagtaaat
aaatataaacttataggtgaaatattctaccagaaagcaaaggagttggatgaaaaaata
aaaaactttgaaactaatattcagagacgatattttgataccgcaccacttgatgatgca
cagctgaaaaattggcatcactatctggactttatcgagaagcaagatgattttgattgg
gctctgcaactgtatgagagatgcttgattacctgcactaattatccagagttctggatg
cgttatgtggagttcatggaaagcaagggaggacgagaactggcaaattctgcactacaa
cgagctacgcaagtctttctgaagttttttcagggtgtgcccgaaatccatctttttaat
gccaggtataaggagcgaattggagatgtgaatgctgcagttgctgcatttctcaactct
gacgttctatctgattccttacccagacatattgtagagctggcaaatatgcgaaggcgt
ctgggtaatctggaagcagcttctgatacattaaaaaatgcaattaatatggcagaaaag
aagcagaagttgcatagtttacctagcctgttcattcactattctcggctcaaatatatg
atcacaggaagtgcagaagctgctagagatgctttaatagatggaattcaacggattcct
cattgcagtaaacttttggaggaattgattaaatttgcaatgatgcatgaaggagccaaa
caagtagatctaatagactcaattataggtcatgcaatttctcccagctctgagggaacc
tctggtctggcccttaaagatcgagaacacgtatcatctttgtttatggagtttgtggac
ctttgtggaacagtgcacgatattagtaaggcatggaatcgtcacattcaattgtttcca
cagttggtcaggaacaatctaatagataaggagctcgacttaggaaaatgcctgtctgat
caaatgttggtcataagagagagcggttcttgtgcctttcctaatttgctagatgaagac
cagcatagtaaccaaccagtcgaagagcaggtaagcttgttaccagcaaatcatgccagc
aaggatgaattggtttctgctgatcagaccccacagaaatgcaataacacagttgactgc
gagagaggggaacacttatctacccaggaggcagacaagcgaaactttggtgcatttgaa
gtggatgaagtagctcatcactcaatgcttcaatcagcagatgatacacctagagtaatg
gaatcaatggacaacttgacggaacagcataaagaaaatgtgcctgcacagatgactcct
gcatcagttcaaatttcaagtaaagctacctcagaaccaaatgcattgacttctaactct
aattgccagtcaagtgcaactgttattttagaatctgcagaagagcattcctgtccaatg
aatatgcaagaccaaaagcacaaacagcatcctaatccagtttcttttggtaatctttcc
ttaaattctcaggaaaaggcctctcagaaattaattgctatggcttctgatgaacatgat
gctgcttcagatatttccaagtctacagattgtttgaatgcaaatagtcctccaaacaga
actgcagctgctgattctgttgaagttcaagaatccccagatgaaactagattggctggc
ttgttatcctcagcaactcaacaagtgagtacaccaacgaaaatgcatccaagttcaatg
ctgtcccccagtgccggtggagaatgccatcaaatgctcaagggtacagtttctgaagga
aaatcttcagagatgcacttgcccactactcatccatatcctcagcattccctagtttgg
aaacaaggggaccacgctgaagtttattgcaaggaaaatgctccacaggagaatctagca
agtaaacatgtctggctggtcaatagtatgccagacatgagctcctcatccacaaatcca
tcacatatcgcaacagatcatggtcaaacattaagtcagacattgccgtatcagcaacat
cttctgcaacagcaataccaacagcagctagttcaaatgctgccactgcatcatcaacac
caacaatcatatttgcaccaccagcagcttctgccacaacaacagcaacaacatcagcag
caagcgtcttcctggcaacaacagcaatatcatcagcaacatcagcagctgctttcatta
ccatatcaaggactgcaaattcagcaacagatgccccacttgcagcagatacatcaacag
gtacagccgcattaccatcagtcagcagaacagttacaactacagcatgctcagcaactg
cagcagcaatttgcaccagtacctgagcaacagctgcagctatatcatcagtcacaaaag
cttgcctatgatatgcatcaacagggatatcaaggacatgcagcacaagtacatcagaca
ttattccagcagtaccaattgtatcaacaaggctatggacaaatgttgcagcagcatcaa
cagcatccgtatcattataatcaaatgcttctgcagcagcccccacaacatcagcaacaa
gatgaacagcaggagcatcatcaaaagagagcttcaaatcaggatctatcacaaggcatc
agtcaacatctatggggccagcagactgcaccacaaggtgctgattctacgctgcttcga
cactcatcaccacaatctatggctcaactgaacacagaaaggcaatctgggctagttgca
tcatcacaccagcagcctttccatggaatatccccttcccgtaatagagacacacctgaa
tctgctgcatcttcacaccatgggcgttaa
DBGET
integrated database retrieval system
