Coffea arabica (coffee): 113710502
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Entry
113710502 CDS
T11342
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113710502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113710502
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113710502
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113710502
mRNA degradation factors
3'-5' decay
Ski complex
113710502
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Ski2_N
Helicase_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
113710502
NCBI-ProteinID:
XP_071916640
UniProt:
A0ABM4VAS8
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All DBs
Position
1e:complement(49186280..49201961)
Genome browser
AA seq
1366 aa
AA seq
DB search
MDRIEAGQEMAFRVGFTGHSGHLTIEPLPPVQRSTPLSSLPDFILPPAFPRETPESIKEY
IKETHLLPRLDPDEFSAEKSGKQWEFDWFDRAKIPLEPSLPRSIVIPTWELPFRRTKRSS
GHDIWEPRSEQVDIAELTAGAEDSGVLPRIVGPAKDYVKGSLSSHPFRPGGLEDSHSLGR
ILPDGAVNGEWVWEVLNGGPAQSIAPSFKDGLDLGDLRAHSSSWNVFVDQSDVKPVQDVK
LNDLSLQFDDLFRKAWEEDVLGYAADGDTSKVQVETKELGSVESESETNVDNSSVASNIA
KIESSVLDEVLSAELQATTTILNGDQDGSIEQPKKAWVVSGASGKIVEQFHELVPDMALN
FPFELDPFQKEAIYYLERGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTIS
NQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHY
VNDVERGVVWEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKKKQIRVTGTTKRPVPL
EHHLFYSGELYKVCENEEFVPKGLKAAKDASKRKTTSAVAGGAGSYPGSSPSNDRARAHR
HESSHQGKQTRHSGSQNLGNSRAVWGNQNNGLGPNTGLRRSEATMWLSLINKLSKKSLLP
VVMFCFSKNRCDKSADSMTTTDLTTSSEKSEIRIFCDKAFSRLKGSDRNLPQIVRVQSLL
HRGIGVHHAGLLPIVKEVVEMLFCRGLVKVLFSTETFAMGVNAPARTVSEHPFLLLVVFD
TLRKFDGKEFRQLLSGEYTQMAGRAGRRGLDETGTVIVMCRDEIPDEGDLKPVIVGRPTR
LESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEKQQLLMRKLAQQTKTIEC
IKGEPAIEEYYEMSSEADTHSTKIVEAVMQSPGSQHYLSPGRVVVVKSESAQDHLLGVVV
KAPSSNNKQYIVFVLMPELPLTLQNPSDSSNLKDDKGAGLQILIPKSKRGLEDDYYSSVT
SRRGSGVVNIKLPHRGTAAGMNYEVRGIDNKEFLSICNCKIKIDQVRLLEDVSAGAYSNT
VQQLLLLKSDGNKYPPPLDPVKDLKLKDLDVVKAYHKLNILLQKMAQNKCHGCVKLEEHI
KLARELKQHREEVNALKFEMSDEALQQMPDFQGRIDVLKEIGCVDADLVVQIKGRVACEM
NSGEELICTECLFENQFDDLEPEEAVAIMSAFVFQQKNTSEPSLTPKLSLACKRLYDTAI
RLGQLQASFKIQIDPEEYARENLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVR
LDETCREFKNAAAIMGNSALYKKMETASNAIKRDIVFAASLYVTGL
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggaccgaatcgaggcaggacaagagatggctttccgggttggattcaccggccacagc
ggtcatctcacaatagagcctcttcctccggttcaacggtccactcctctcagttcactc
cctgatttcatactcccccctgcatttccacgggaaacgccagaatcaataaaagaatat
ataaaggaaacgcatctactcccaaggttggatcctgacgagttttctgcagaaaaatct
ggaaagcaatgggaatttgattggttcgacagagctaaaattccattggagccttctttg
cctcggtctatagttattccaacatgggaattaccttttagacgtacaaaaagaagttct
gggcatgatatatgggagcctagatcagaacaggtagatatagcagaacttacagcagga
gctgaggattctggtgtattgcctcgtattgttggacctgcaaaagattatgtaaaagga
agcctcagcagccatccttttcgtccaggtggtttggaggattctcattctttggggagg
atccttcctgatggtgctgtcaatggtgaatgggtatgggaggtacttaatggaggtcct
gcacaatctattgcgccgagctttaaggatggtctggatctaggtgatctcagggcacac
tcaagttcatggaacgtttttgtggatcagagtgatgttaagcccgtgcaagatgtgaaa
ttgaatgatttgtctttgcagtttgatgacttgtttagaaaagcttgggaagaggatgtg
ttaggttatgctgcagatggtgacacatcaaaggtccaagtagaaacaaaagaattaggc
tctgttgaatcagagtcagaaactaatgtagataattcttcagtggccagtaatattgca
aagattgaatcatctgttttggatgaggtattgtctgctgaattacaagcaacaactaca
atcctcaatggagatcaagatggtagcattgaacagccaaaaaaggcatgggttgtcagt
ggagccagtggaaagatagtggaacagtttcatgaacttgttcctgacatggcacttaat
tttccgttcgaattggatccattccaaaaggaggccatctattatcttgaaaggggagac
tctgtttttgtggcagctcacacatctgctggaaagacagttgttgcagagtatgcattt
gctttggcaacaaaacattgcacgagagctgtatatactgctcccatcaagaccatcagt
aaccaaaagtacagggacttttgtgggaaatttgatgtgggtcttctcactggtgatgtc
agtttgaggccagaggcctcttgtcttatcatgactacagagatattgagatcaatgctc
tatcgtggtgctgacatcatacgtgacatagaatgggtaatatttgatgaagttcattat
gtgaacgatgttgaaagaggtgttgtttgggaagaagttattatcatgctccccaggcat
attaactttgtcctgctctcagccacggtaccaaatacaattgagtttgctgattggatt
ggtcggacaaagaaaaagcaaattcgtgtgactgggacaacaaagagacctgtccctttg
gagcaccacctcttttattctggagagctttacaaagtctgtgaaaacgaagagtttgtg
cctaaaggactgaaagctgccaaagatgctagtaagaggaagaccacaagtgctgttgct
ggtggagctggatcttatcctgggtcttctccatccaatgatagggctcgagctcacagg
catgaaagttctcatcagggaaaacagaccaggcattctggatcccagaacttagggaac
tctcgggctgtctggggaaaccagaacaatggccttggccctaatacagggttgaggaga
tcagaggctacaatgtggctatcgctgattaacaagctgtcaaagaaatccttgttacct
gtggttatgttttgtttctcaaagaatcggtgtgataaatcagctgatagtatgaccaca
actgaccttacaactagttcggagaaaagtgagattcggatcttctgtgataaagcattt
tcacggctaaaggggtccgataggaacctaccacagattgtcagagttcaaagccttctt
caccggggcattggtgtgcatcatgctggactgcttccaattgtcaaggaagtagttgaa
atgcttttctgtcgtggtttggtcaaggttttattctcaactgagacatttgcaatggga
gtgaatgcccctgcaaggacagtaagtgaacatccattcctgctattggtggtgtttgat
actttaaggaagtttgatggcaaggaatttagacagttactctcaggagagtatactcag
atggctggtcgtgctgggaggagaggactggatgagactggtacagttattgtcatgtgt
cgtgatgaaatccccgatgagggagatctaaagcctgtgatagttggtaggccaactagg
cttgaatctcaatttcgactgacctatatcatgatcctgcatctcctccgtgttgaagaa
ctgaaggtggaggatatgctaaaaagaagttttgctgaattccatgctcagaaaaaactt
cccgagaaacagcaacttctaatgcgaaagcttgcccagcaaacaaaaactattgaatgc
ataaagggtgaaccagcaatagaggagtactacgagatgtcctcagaagctgacacacat
agcaccaagatagtggaggcagtcatgcagtcccctggctcccagcattatcttagtcct
ggaagagtggtggttgtaaaatcagagtcagcccaggatcacttgctaggcgttgttgtg
aaagcaccttcttctaacaataagcagtacatagtttttgtgctgatgcctgaattgcct
ttgacattgcaaaacccatcagatagtagcaacttgaaggatgataaaggtgctggttta
cagatattgatacctaagtcaaaacgtggtctggaggatgattattattcttcagtcact
tctcggagaggttcaggtgttgtcaacattaaattacctcatcgtggtactgctgctggg
atgaattatgaagttcgaggaattgataacaaagagttcctttcaatatgcaattgcaaa
ataaagattgatcaagttcgacttctggaagatgtcagtgctggagcctactcgaatact
gtacagcagctgctgttattgaaatctgatggaaataagtaccctccacctctagatcca
gtcaaagatctgaagctgaaagacctagatgttgttaaagcttatcataaattgaacatt
ttgttgcaaaagatggcacaaaataaatgccacggatgtgtcaaattggaggagcatatt
aagttagcccgtgaattgaagcagcacagagaggaagtcaatgccttgaagttcgaaatg
tcagatgaagcactgcagcaaatgcctgattttcagggtcggattgatgttttgaaggaa
atcggttgtgtagatgctgaccttgtggttcaaataaaaggccgtgttgcttgtgaaatg
aattctggggaggaattaatatgcactgagtgcttgtttgagaatcagttcgatgacttg
gaaccagaagaagctgtggcaattatgtctgcctttgtctttcagcagaaaaatacctct
gaaccttctcttacaccaaagctttctctggcttgtaagagattgtacgatacagcaata
aggctaggtcaacttcaagcaagcttcaaaatacagatcgatccagaagagtatgctcgg
gagaatctcaagtttggtctcgttgaagtggtttacgaatgggcaaagggcactccattt
gctgatatttgtgaactcactgatgttcctgaaggtttgatagtcaggaccatagttaga
ttggatgagacatgccgtgaatttaaaaatgctgctgcgatcatgggtaattctgccctt
tacaagaaaatggaaactgcttcgaatgccataaagcgcgacattgtctttgctgctagc
ttgtacgtcacagggttgtga
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