Coffea arabica (coffee): 113710518
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Entry
113710518 CDS
T11342
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113710518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113710518
04121 Ubiquitin system [BR:
carb04121
]
113710518
03036 Chromosome and associated proteins [BR:
carb03036
]
113710518
03400 DNA repair and recombination proteins [BR:
carb03400
]
113710518
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
113710518
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
113710518
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
113710518
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
113710518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-C3HC4_2
zf-HC5HC2H_2
zf-RING_2
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
RTT107_BRCT_5
zf-RING_UBOX
zf-RING_10
PHD_NSD
zf-RING_5
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
113710518
NCBI-ProteinID:
XP_027089370
UniProt:
A0A6P6UEY8
LinkDB
All DBs
Position
9e:27055448..27066905
Genome browser
AA seq
999 aa
AA seq
DB search
MAADTSHLEKMGRELKCPICLSLLNSAVSLSCNHVFCNCCIEKSMKSASDCPVCKVPFRR
REIRPAPHMDNLVSIYKSMEVASGVNIFVTQTAPTTRLSGHESHSDGDKIGDIQENINTC
IGTSAEENQKICKRKGSKRSTQAKCPLKPSFPKKKRVHVPQSPPSETPIRLEKLVNETAE
ISKNEPESSFLMKEKHVFKKKGEPLFTPFFWLRDEEDPENPTQQTDEDQIMDTPPDAPCF
SDIKDSDDEVPNEMPPDGEKCIAYSDMDLFDSEMFEWTQRGCSPELQSSPVPMQAEECGE
DIIEPATHITTTIVDSKVQNREVRISETDKEDLGLPCLSVEIPMDKIASKAAGMSRKRIK
KSVENSQSKRAKMTTNKARRAHKESEQRPGKSMPEEQFGNNDNVFNLPRKTSKRNKKVSF
DANVAEAAGNTSTSSGGTNPLFKGKNKVMIGLPDLLGHKRQKRGSKREKIGKMKDSLKLE
KHSPNLRAKKPEELDERLTLKQCGGLISHSGQKVAPEEEGAFGMDRVLRRCGDNHGKKKN
NLKMARCFKGNKSGNTLTDLYQNGDGEVAAEIIPSVGADQEKPTSRETQNPAGVHPQGAS
SPNKIQCAFCQSAEDSEASGVMVHYLKGKPISGDEIRGPNVIHSHKYCTEWAPNVFFQDD
NAINLEAELARSRKIKCGLCGMRGAALGCFQKSCRKSFHVTCAKLTPNFRWDYDNFVALC
PLHASCKMPCEATGSESNTKRKSAPKGDYHIQGPQVVKDDVKEHLQWKCDKKAKNLILCC
SGLTNAEKDIVSQFQQLSGVIALKNWDLSVTHIVASTDENGVCKRTLKFMMGVLEGKWIV
NIEWVKACIKLMELVDEELYEIKVDSHGIRDGPSRGRSRLLDKKPKLFSGYKFYFLGEFV
PSYKGYLHDLVIAAGGTVLNRKPISEEQKIFSSECPPSTTFIVYSLEQPEKCGASKRNTI
LNRRRFDAEALASSTRAVAVSNSWILNSIAGCKLQNLPE
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggacacttctcatctggagaaaatgggtagagaactcaaatgccccatctgc
ttgagtctgttgaattctgctgtctcgctctcatgcaatcatgtattctgcaattgctgc
attgagaaatctatgaaatcagcatcagattgtccagtatgtaaagtaccatttcgccgt
agagaaattcgtcctgctcctcatatggacaacctggtcagcatttacaagagcatggaa
gtagcttcaggagtcaatattttcgtcacacagacagcccctacaactagactatcaggg
catgagagccattctgatggtgataaaattggtgatattcaagaaaatattaatacttgc
attgggacttcagcagaggagaaccagaaaatatgcaaaagaaaggggtctaaaagatca
acacaagctaaatgtcctttgaagccttcctttccaaaaaagaaaagggttcatgttcca
caaagtccaccttctgaaacccctattaggcttgaaaaattggtaaatgaaactgctgaa
atcagcaaaaatgaacctgagagctctttcctgatgaaggaaaagcatgtgttcaagaaa
aagggagagcctttatttactccattcttctggctgagagatgaagaggatcctgagaat
cctactcagcaaacagatgaagatcagatcatggatacaccacctgatgctccttgcttc
agtgatattaaggattctgatgatgaagtccctaatgaaatgcccccagatggggaaaaa
tgtattgcatacagtgacatggacttgtttgatagtgaaatgtttgaatggacacaaaga
ggatgttctccagaacttcagtcaagccctgttccaatgcaggcagaggaatgtggagaa
gacataatagagcctgccacacatattacaactacaattgtggattctaaagttcagaac
agagaagtcaggataagtgaaactgacaaggaagatttgggtttaccatgtctgtcagtt
gaaattcccatggataaaattgctagcaaagcagctgggatgtctagaaagagaattaag
aagtcagtagaaaacagccaaagtaagcgagccaagatgactacaaataaggcacgtaga
gctcataaagaatcagaacaaaggcctggaaaaagcatgccagaggagcagtttggcaat
aatgataatgtattcaatttaccaaggaaaacatctaaacggaacaaaaaggtttccttt
gatgctaatgttgcagaggcagcaggaaatacatctacttcatctggtgggacaaatcct
ttgttcaagggtaaaaacaaagtaatgattggtcttccagatttattaggtcacaagagg
cagaaaaggggaagtaaacgtgagaaaattggcaaaatgaaggatagtcttaaactagag
aaacatagccctaatttaagagccaaaaagccagaagagttggatgagaggttgactctg
aagcaatgtgggggtttgatttctcattcaggtcaaaaagtagctcctgaggaggaggga
gcttttggtatggatagggtacttagaagatgtggggacaaccatggaaaaaagaaaaat
aatttgaaaatggcaagatgtttcaaaggaaataaatctggaaatactctgactgatctg
tatcagaatggtgatggagaggttgctgcagaaattattccaagcgtaggagcagatcag
gagaaacctaccagcagagagacacaaaacccagcaggtgttcacccgcagggtgcgtcc
agtcctaacaaaattcagtgtgcattctgtcaatctgctgaagactctgaggcttcaggt
gtcatggttcattacctcaaaggcaagcccatttcaggtgacgagattagaggaccaaat
gtcatacattctcacaagtattgcacagaatgggctcctaatgtattttttcaagatgat
aatgcaattaaccttgaagctgagttggcaagaagtcgaaagataaagtgtggtttatgt
ggaatgcgaggggcagctcttgggtgtttccagaagagttgccgcaagagctttcatgtt
acatgtgcaaagttgaccccaaactttcgatgggattatgataactttgtagcattatgt
ccccttcatgccagttgtaaaatgccatgtgaagcaactggatctgaatccaacacaaag
aggaaatctgctcccaaaggggattatcatatccaagggccacaagtggttaaggatgat
gttaaagaacatctgcagtggaaatgtgacaaaaaggccaaaaacttgattctctgctgt
tcaggcctcactaatgctgagaaggatattgtttcccaatttcagcagttgtctggagtt
atagcactgaagaattgggatctaagtgtgacccacattgttgcatctactgatgagaat
ggggtttgcaaaagaaccctcaaatttatgatgggtgtcttggaggggaaatggattgtg
aacattgaatgggttaaggcctgcattaagttaatggaacttgttgatgaggagctttat
gaaatcaaggttgatagccatggaatcagggatggtcctagccgtggaagatcaagactt
ctggacaagaagccaaagctcttcagtgggtacaaattctattttctgggcgaatttgtt
ccttcatacaaagggtatcttcatgatctggttattgctgctggaggaactgtactaaac
agaaagcctatttctgaagagcagaaaatcttttcatcggagtgccctccttcaactact
ttcattgtttatagccttgagcaaccggagaaatgtggggcaagcaagagaaacacaata
ctgaaccgtagacgttttgatgcagaggctttagctagttccacaagagctgttgcagta
agcaattcatggattttgaactcaattgctggctgcaaattgcaaaaccttccggaatga
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