Coffea arabica (coffee): 113711043
Help
Entry
113711043 CDS
T11342
Name
(RefSeq) geranylgeranyl pyrophosphate synthase, chloroplastic
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00900
Terpenoid backbone biosynthesis
carb01100
Metabolic pathways
carb01110
Biosynthesis of secondary metabolites
Module
carb_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
113711043
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
carb01006
]
113711043
Enzymes [BR:
carb01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
113711043
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
113711043
2.5.1.29 geranylgeranyl diphosphate synthase
113711043
Prenyltransferases [BR:
carb01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
113711043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
UbiA
Motif
Other DBs
NCBI-GeneID:
113711043
NCBI-ProteinID:
XP_027089978
UniProt:
A0A6P6UHN9
LinkDB
All DBs
Position
10e:2482504..2484175
Genome browser
AA seq
375 aa
AA seq
DB search
MRSMTLVDSWVQTCSVFNQPKTHYRSFNGLIHKPMNNPQFKPNFLKQTKPVSSFTISAII
TREEETIDAEKDRESKDSSTLFNFKSYMVEKANIVNKALDDSVSVKNPPKIHEAMRYSLL
AGGKRVRPMLCIAACELVGGHQSQAMPAACAVEMIHTMSLIHDDLPCMDNDDFRRGKPTN
HKVFGEDVAVLAGDSLLAFAFEYIVTATTGVAPARVLAAVGELAKSIGTEGLVAGQVVDL
ASTGKADVGLDQLEFIHLHKTAALLEASVVLGAILGGGTPEGVEKLRRFARCIGLLFQVV
DDILDVTKSSEELGKTAGKDLVTDKVTYPKMMGLDKAREFAEKLNEDAKQQLSEFDPDKA
APLIALADYIAHRDN
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgagatctatgactttggtagattcgtgggttcagacctgttcagtcttcaatcaacca
aaaacccattacagatccttcaatggtcttatccacaaacccatgaataacccccaattc
aaacccaatttcctcaagcaaacgaagcccgtctcttccttcaccatttcagcgatcata
acaagggaagaagaaacaattgatgccgagaaagaccgagaatccaaggactcttcgacc
cttttcaacttcaaatcctacatggttgaaaaggccaatatagtcaataaagcattggac
gactccgtttccgtcaagaacccaccgaagatccacgaagcaatgcgctattctttatta
gccggcggcaagagggttcgtcccatgctctgcatcgccgcctgcgagcttgtcgggggc
catcagtctcaagccatgccggccgcctgcgctgtggaaatgatccacacaatgtcctta
atccacgatgatttgccgtgcatggacaacgacgacttccggcgaggaaaacctacgaat
cataaagtcttcggagaggacgtggcagtcctcgccggcgattccctgctggccttcgcc
ttcgagtacatcgtcacggcgaccacaggggtagcaccagccagagtcttggccgcagtt
ggagaattagcaaaatcaatcgggactgaaggcttagtcgcgggccaagttgtcgatttg
gcctccaccggaaaggctgatgttggattagaccagctggaattcattcatctacacaaa
acggcggcgctattggaagcctcagtagttttgggagcaattttgggtggtgggactcca
gaaggagttgaaaaactgcggagatttgcaaggtgcattgggctgttatttcaggtggtg
gatgatattcttgatgtgacaaaatcttccgaggaattgggcaaaacagcagggaaagat
cttgtaacagataaggttacttatccgaaaatgatggggttagacaaggctagggagttt
gctgagaagttgaacgaggatgccaaacagcagttgtctgaatttgatccggataaggca
gctcctttaattgcattggcggattatattgctcatagggataactag
DBGET
integrated database retrieval system
