Coffea arabica (coffee): 113711653
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Entry
113711653 CDS
T11342
Name
(RefSeq) transcription initiation factor TFIID subunit 4b-like isoform X3
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
carb Coffea arabica (coffee)
Pathway
carb03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113711653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113711653
03036 Chromosome and associated proteins [BR:
carb03036
]
113711653
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
113711653
Coactivators
SAGA/TFTC/STAGA complex
113711653
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
113711653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
Motif
Other DBs
NCBI-GeneID:
113711653
NCBI-ProteinID:
XP_027090621
UniProt:
A0A6P6UJZ6
LinkDB
All DBs
Position
10c:complement(5930730..5938394)
Genome browser
AA seq
922 aa
AA seq
DB search
MDPSIMKLLEEDEDETMHSGADVEAFTAALNRDIEGDISTSQPSDSDSNALSQGSSHASS
QFLPQWQTSNHDDNANSLSQQDPLGSQKSEPLSAEMDVKQPGLVHENQKQQDNTMQEEIN
MQDAYTNVVHNTGPERTQNPDHDAQLVNLQKANNQQASFSAMSNQQAVVSTMTNQQPKAP
GTSNQQASNALNRGKQVPFALLLPVIQPQLDKDRAMQLNTLYLKLRKNEISKDGFVRHMR
SIVGDQMLKMAVYKLQSQAARNTQNVPSQVPSQSQVSTQQQNLPTSSTVAMTTDSTNKVS
DSNAQKPREVERLPDSHGVPLSQMSTASLAANQDKERSAFPPQGINKQHSQHMLFSHPSF
PTYGNTGSIHRPYSTMNTNTSTPLKQLPHDSQMRPIPAHQTMNATQLGTTTQGMNMVSVT
KFDGQNSFNDPKRLQSGSLTPATNSPVLPQNSVQWQSLSAKEQKSGIPSSTTFVKPEPLD
QSNEQYKSQFSATQGLSSFPSTNVEQGNTLPGTLKDETFEMQSSRLGFSAPTSTVPTNPM
LSSMPSQMEPNNTLNSRMHSSTSASMGIGTSSKAPAKKPSIGQKKPQEALGSSPPPSSKK
QKVSGAFLDQSIEQLNDVTAVSGVNLREEEEQLFSGPKEDSRVSEASRRVVQEEEDRLIL
EKIPLKRKLAEILAKCGLKGISNDVERCLSLCVEERMRGLVGNLIRLSKQRLDIEKSRHK
TVVTSDVHQQIMLINRKAREEWEKKQAEVEKQQKLNEPESNPGVDGEKEKDEGRVKPVKA
NKEEDDKMRTTAANVAARAAVGGDDMLSKWQLMAEQARQKREGGIDAASGSQPGKDTGRK
PSSGRSSRDNQEVEKRGQSAANSTPGAARKVGRNQVVVTQPKVARTISVKDVIAVLEREP
QMSKSTLMYRLYERIRSDANDK
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggacccttcaatcatgaaactcctggaagaagatgaggatgagacgatgcattctggg
gccgacgtggaggccttcacagctgccctgaatagagatatcgaaggggatatttccaca
tctcagccctctgattcagatagtaatgcattgtctcaaggaagtagtcatgcttccagt
cagtttcttccccagtggcaaacttcgaatcacgatgacaatgctaattctctaagtcag
caagatcctcttggttcacagaaaagtgagccattatcagcggaaatggatgtgaaacaa
cctggattggtccacgagaatcagaaacaacaagataacaccatgcaggaggaaattaat
atgcaggatgcttatactaatgttgtccataacactgggcctgagagaacacaaaatcca
gatcatgatgctcagcttgtaaacttgcagaaggcaaataatcagcaggcatcattttca
gcaatgagtaatcaacaggctgtggtgtcaacaatgaccaatcaacagcccaaggctcca
ggaacaagtaatcaacaggccagcaacgcattgaatcgtgggaaacaagtgccttttgct
ctgttgctacctgtcatacagccccaacttgataaggatagagcaatgcaactaaacact
ctttaccttaaattaaggaaaaatgaaatctctaaggatggttttgtccggcacatgaga
agtattgtcggagaccagatgctgaagatggctgtttataaattgcagtctcaagctgct
cgaaacacacagaatgtgccaagtcaagttccatcacagtcacaggtttcaactcagcag
caaaatttgccaacctcatctactgtcgccatgacaacagactcgaccaataaggtatct
gatagcaatgctcagaaaccacgagaggttgaacgactgccagattcacatggagtccca
ttaagccaaatgtctactgctagtttggctgctaatcaagataaggaacgctctgctttt
ccaccacaaggaatcaataagcagcattcacagcatatgctcttctcacatccgtctttt
ccgacatatgggaatactgggagcattcatcgcccgtattcgacaatgaatacaaatact
tcaacacctctcaaacaactaccccacgactcccaaatgagacctattccagctcatcaa
accatgaatgcaactcaattgggaacaacaacccagggcatgaatatggtgagtgtgacg
aagtttgatgggcagaattctttcaatgaccctaaaagattgcaaagtggaagtctcaca
cccgccaccaacagtccagtgctgccccagaattcagttcagtggcaatcattatctgct
aaagagcagaaaagtgggattccatcttctaccacctttgttaaaccagaaccgcttgat
cagtcaaatgaacaatacaaatcccagttttcagctacacaggggttgtcatccttccct
tccacaaatgttgaacaaggaaacactcttcctggaactttaaaggatgaaacttttgaa
atgcagtcctccagattggggttctcggcacccacaagcacggtgccaacaaatcccatg
ttgtcatcaatgcccagtcagatggaacctaataatacgttaaattccaggatgcattct
tctacctctgccagcatggggattggaaccagttcaaaggctcccgctaaaaaaccttcg
atcggccaaaaaaagccacaggaggcccttggttcctcaccacctccatcaagtaagaag
caaaaagtatctggtgcctttctggatcaaagcattgaacaactcaatgatgtgactgct
gtcagcggtgttaatctcagggaagaggaagaacaactattttctggtccaaaggaagat
agtcgtgtttcagaagcatctcgacgtgttgtgcaagaagaagaagatcggctgattttg
gaaaaaatccctcttaagcggaaattagcagagattttggcaaaatgtggtttaaagggt
atcagcaatgatgttgagcggtgcttgtctctgtgtgtggaagaaagaatgcgtgggctg
gtaggtaatcttatcagattgtcgaagcagcgcttggatatagagaagtctaggcacaaa
actgttgtgacctcagatgttcaccaacaaatcatgttgattaaccgaaaagctcgggaa
gaatgggagaagaaacaagctgaagtagagaaacaacaaaagctgaatgaacctgagagt
aatcctggggttgatggtgagaaggagaaggatgaaggtcgtgtaaaaccggtaaaggca
aacaaggaagaagatgacaagatgaggacaacggctgcaaatgttgctgcccgagctgct
gttggaggagacgacatgctgtcaaagtggcaactgatggctgagcaagccaggcagaaa
cgtgaaggaggaattgatgcagcatctggttcacagcctggaaaagatacaggcagaaag
ccgtcatcaggaagaagttcaagggacaatcaagaagtggagaaaaggggccaatctgct
gctaattccactcctggagcagctagaaaagtaggaagaaatcaagttgtagtgacacaa
cccaaggtggctcgcactatttcagtcaaggatgtgattgctgttctagaaagggagcct
cagatgtcaaaatcaacgcttatgtaccgattgtatgagagaatccggagtgatgctaat
gacaaatga
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