Coffea arabica (coffee): 113712282
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Entry
113712282 CDS
T11342
Name
(RefSeq) vacuolar protein sorting-associated protein 35B isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
carb Coffea arabica (coffee)
Pathway
carb04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
113712282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
carb04131
]
113712282
Membrane trafficking [BR:
carb04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
113712282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
113712282
NCBI-ProteinID:
XP_027091425
UniProt:
A0A6P6UKN7
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Position
10e:1056020..1065757
Genome browser
AA seq
791 aa
AA seq
DB search
MMIADGIEDEEKWLAEGIAGIQHNAFYLHRAVDSNNLREALKYSAQLLSELRTSRLSPHK
YYELYMRAFDELRRLEMFFKDEERHGCSVLDLYELVQHAGNVLPRLYLLCTVGSVYIKSK
EAPAKDVLKDLVEMCRSVQHPIRGLFLRSYLAQISRDKLPDIGSEYEGDGDTVMDAVDFV
LQNFTEMNKLWVRMQHQGPIRVKEKLDKERSELRDLVGKNLHVLSQIEGVDLEIYKDTVL
PRVLEQVVNCKDELAQHYLMDCIIQVFPDEYHLQTLETLLGAFPQLQPAVDIKTVLSQLM
DRLSNYAASSAEVLPEFLQVEAFAKLSNAIGKVIEAQVEMPVVGAISLYVSLLTFALRVH
SDRLDYVDQVLGACVKKLSGSPKLEDNKATKQVVALLTAPLEKYNDIDTALTLSNYPHVM
DHLDAGTNKIMAMVLIQSIMKYNTCVSTAEKVDVLFELIKGLIKDIDGTLADELDEEDFK
EEQNSVARLVHMLYNDDPEEMLQIICTVRKHIMAGGPKRLPFTVPPLVFSALKLVRRLQG
LDGEVAGEEVPATPRKIFQLLNQIIEALSNVPSPELALRLYLQCAEAANDCDLEPVAYEF
FTQAFVLYEEEVADSKAQVTSIHLIIGTLQRMNAFGVENRDTLTHKATGYSAKLLKKPDQ
CRAVYACSHLFWVDDQDGIKDGERVLLCLKRSLRIANAAQQMANVTRGTGGPVTLFVEIL
NKYLYFFEKGNPQVTSAAIQDLIELIKTEMQSDTATPDPASDAFFACTLRYIEFQKQKGG
AMGEKYDSVRI
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgctgacggaatcgaagacgaagagaaatggctagctgaaggcatcgccggg
attcaacacaacgccttttacctgcatcgtgctgtggactccaataatctgagagaagca
cttaagtattccgcgcaacttttgtctgagcttcgaacttccagactttcacctcacaaa
tactacgagctttatatgcgagcttttgatgaattacggaggcttgaaatgttcttcaag
gatgaggagagacatggttgttccgtccttgacctttatgaacttgtccaacatgctggg
aatgttttacctcggctgtatcttttgtgtacagtaggatctgtttacatcaaatcaaag
gaggctccggcaaaggatgttcttaaggaccttgttgaaatgtgccgcagtgttcagcat
ccaatacgtgggctctttttgaggagttatttggctcaaattagtcgagataagttacca
gatattggctctgagtatgaaggagatggtgataccgtcatggatgctgtggattttgtg
cttcaaaactttactgagatgaataaactttgggttcgaatgcagcatcagggacctatc
agggtaaaagagaaactggacaaggaaaggagcgagcttcgtgatcttgttgggaagaat
ttgcatgtcctcagtcaaatagagggtgttgacctcgaaatatacaaagatactgttctc
ccaagggtcttggaacaggttgtcaattgtaaagatgagcttgcgcagcattatttgatg
gactgcataattcaggtctttccagatgagtatcacctacagactcttgagacattattg
ggtgcatttccccaacttcaacctgcggttgacattaagacagtgttatcacaactgatg
gacagattgtcaaactatgctgcttctagtgcagaagttttacctgaattcctacaagta
gaagcatttgccaagttaagcaatgccattggcaaggtgattgaagcacaggtggaaatg
ccagttgttggggccatttccttgtatgtctcccttctgacatttgctctcagagttcat
tcggatcgtcttgactatgtagatcaagttctgggagcatgtgtcaagaaactttctggg
agcccaaagctcgaagataataaggcgacaaagcaagtagttgcgcttttaactgcaccg
ttagagaaatacaatgatattgacacagctctcactctttccaattatccgcatgtcatg
gatcatcttgatgctgggactaataaaatcatggccatggttcttatccaaagtattatg
aagtacaacacgtgtgtctcgactgctgagaaggttgatgttttgtttgagttgataaaa
gggcttatcaaggatatagatggtactttagctgatgagctcgacgaggaggatttcaag
gaggagcagaattctgtggctcgacttgtacatatgctatataatgatgacccagaggag
atgttacagataatatgtaccgtgagaaagcatatcatggctggaggtccaaagcgcttg
ccttttacagttccacctcttgttttttctgccctcaagttggttaggcgattgcaagga
ctagatggagaagttgctggagaagaggtcccagcaactccaaggaaaatatttcagctc
ctgaatcagataattgaggcactctcaaatgttccgtctcctgaactggcattgagattg
tacttacagtgtgctgaggctgccaatgactgtgatcttgagccagttgcttatgaattt
ttcacacaagcatttgtattatacgaggaagaagttgcggattctaaagcccaggtgact
tctatacacctaattattgggactcttcagaggatgaatgcatttggtgtggagaatagg
gatactctaacacacaaggccactgggtattcagcaaagcttttgaagaaacctgatcag
tgtcgggcagtttatgcctgttcacacctcttttgggttgatgatcaagatggaatcaag
gatggggaaagggttttactttgcctcaagcgatctctcaggattgcaaatgctgcacaa
caaatggccaacgttacaaggggcactggtggaccagttacactctttgttgaaatactg
aataagtatctttattttttcgaaaaggggaacccccaggtaacaagtgcagcaattcag
gatcttatagaattaataaaaactgagatgcagagtgatacagcgacaccagatccagct
tcggatgctttctttgcctgcacgttacggtatattgaatttcagaaacaaaaaggtggt
gcaatgggtgagaaatatgattccgtcagaatttga
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