Coffea arabica (coffee): 113712287
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Entry
113712287 CDS
T11342
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113712287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113712287
03009 Ribosome biogenesis [BR:
carb03009
]
113712287
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113712287
Spliceosome [BR:
carb03041
]
Complex A
U1 snRNP components
U1 related factors
113712287
Complex B
113712287
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
Pre-60S particles
Helicases
113712287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
OapA_N
Motif
Other DBs
NCBI-GeneID:
113712287
NCBI-ProteinID:
XP_027091432
UniProt:
A0A6P6UNY6
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All DBs
Position
1e:50528975..50536220
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AA seq
556 aa
AA seq
DB search
MSYVPPHLRNSTTDTAATTVTTLDTNHFHSYSNLSSETNNSSNNYLNSARRSTVNYTSPR
TVSAPDIVFPNWKPSERVLRLTPEQIDEVRLRLNLDVIVAPDSPPAPAPIESFTDMCLHS
SIMKDISFHGYTTPTPIQAQAMPVALSGRDLLGCAETGSGKTAAFSIPMIQHCLAQPPVR
RGDGPLALVLAPTRELAQQIEKEVKAFGKSLDSFRTAIVVGGTNIGDQRSELRLGVDVVV
ATPGRFIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQMREVMQNLPQKHQTLLFSATM
PVEIEMLAQEYLTNPVQVKVGKVSCPTANVLQSLEKVPENEKIDRLLGMLVEEAARAERF
GHPFPLTIVFVERKTRCDEVAEALIAQGLKAVVLHGGRSQSERELSLRDFRHSATNILVA
TDVASRGLDVSGVAHVVNLDLPKTMEDYVHRIGRTGRAGSSGRATSFYTDRDMYLVAQIK
KAIVDVESGNTVSYATGKVARRMEKEAAAAHKEARIALSKVSLLGTAPLNVEDKYKHMIF
PAMARKEGAADDAWDD
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtgcctcctcacctgagaaactcaaccactgataccgccgccaccacggtc
accactctagacaccaatcacttccattcttactccaacctcagctccgagacgaacaac
agcagcaataactatctcaattcagctcgccggagcaccgtcaattacacctctccgagg
actgtttcggctcccgacattgtcttccccaattggaaaccttccgaacgcgttctccgt
cttacacccgagcagatagatgaggttcgtttaagacttaatcttgatgttatagtagcc
ccagactcgcctcctgcgccagcgcctattgaatcatttactgacatgtgtttgcattct
agcattatgaaggatatatcttttcatggatacacaactccaacacccatccaggctcag
gccatgccagttgctctcagtggaagggatcttttaggttgtgcagaaactggcagtggc
aaaactgctgcattctcgatacctatgatacagcattgcttggctcagcctccagtcaga
cgtggtgatggacctttggcgttggtactggctcctacaagagagctagctcaacaaata
gagaaagaggttaaggctttcggtaaatcattggattcttttagaactgcaattgtggtg
ggcggaacaaatattggtgatcagagatctgagctacgcctaggggtggatgtagtggtt
gcaactcctggaagatttattgatcatttgcagcaaggaaatacttccctctccaggatc
tcatttattgttctggatgaagctgatagaatgctggatatgggatttgaaccacagatg
agagaggtgatgcagaatcttcctcaaaaacatcaaactttattgtttagtgcaaccatg
ccagtggagattgaaatgctagcacaggagtatttgacgaatccagtgcaagtaaaggta
ggcaaagtgagttgcccaactgcaaatgtattgcagagtttggaaaaggtgcctgaaaat
gagaagatagatcggcttttaggaatgctcgtggaggaagctgctagggctgaaagattt
ggccatccctttcctttgacaattgtctttgtggaacgtaagactaggtgtgatgaagtt
gcagaagcattgatagctcaaggtttaaaagcggttgttctacatggtggtcgcagtcaa
agcgaaagagaattgtcccttcgtgattttaggcacagtgctactaatatcctggttgct
actgatgttgcatctcgtggattagatgtcagtggagtggctcatgtagtgaatctagat
cttccaaagaccatggaagattatgtacaccggataggaaggacaggtcgtgctggatca
tcaggcagggcaacatcattctatactgaccgagacatgtatctggttgcacaaataaag
aaagcaattgtagatgttgaatctggcaatacagtcagttatgctactgggaaggttgct
cggaggatggagaaggaagctgcagctgctcataaggaagcgaggattgcactctccaag
gtctccttactgggcactgcacctttgaacgtggaggataagtacaagcacatgatcttc
cctgcaatggcaagaaaagagggtgcagcagacgatgcttgggacgattaa
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