Coffea arabica (coffee): 113712317
Help
Entry
113712317 CDS
T11342
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113712317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113712317
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
113712317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_14
TPR_8
TPR_19
TPR_17
TPR_16
TPR_CcmH_CycH
TPR_9
TPR_12
TPR_20
TPR_7
BTAD
DUF6584
TPR_15
TPR_NPHP3
GET4
Ig_ZP2_N
DUF7017
Motif
Other DBs
NCBI-GeneID:
113712317
NCBI-ProteinID:
XP_071923838
UniProt:
A0ABM4VWD0
LinkDB
All DBs
Position
10e:complement(104897..115460)
Genome browser
AA seq
1180 aa
AA seq
DB search
MDGGKDCEAVARRRHLEELLNSEPDDSSLHFKLGILLWEEGEESKAAEHFVTCAKLNPQE
AAAFRYLGDYYSRLDYDQSQNQRALKCYQRALLLDPDDSLSGEAICDLLDQQGKISLQFA
ICTQASDKSPRAFWAFRRLGFLQVHQKRWSEAVQKLQHAIRGYPTCADLWEALGLAYQRL
GMFTAAIKSYGRAIELEESRIFALIESGNISLMLGSFRKGVEHFRQALLISPENLAAHYG
LASSLLGLAKECINSGAFRWGASLLEEASEVIVSIMTLAGNISCIWKLHGDIKLFYAKCF
PWVDDGWGLKADQKSFSDSIISWKRICHLAAVSSSRSYQRALHLAPWQSNLYTDIAIASD
ITFFSKENHEEDLNSWSQAEKMCLGGLLLEGENNEFWVTLGCLSDHNALRQHAFIRGLQL
DVSLAVAWAYLGKLYRLEGERKLAQQAFDRARSIDPSLALPWAGMSADADIRNLKPDEAY
DCCLQAVQILPLAEFQIGLAKLGLYSGQMPSSEVFRAIRQALQRAPHYPESHNLNGLICE
ARSLYQSASASFRLARHAVSSFSGKVSKLYHKDISMNLVRSLCKAGSPNEAVEECELLKK
EGLLDLEGLQIYALCLWQLGKNDLALLTARTLAANILSMDSRKAAATISFISRLMYYISG
QDSVISSILKMPKDLFQSSKVSFIVSAIDALDCSDQLGPIVSHSHRSLMSSEEITSMHSL
IALGKLVKYVSDDSLGIQNGVDHLRKALHMYPHSGLIRNLLSYLLLFSEEWKDVHLATRC
FIVDSYDHQKEKVLKSSFEILGAGAVACYTKGRCSDEFSFSTSKEQCLFGTGKIQQLQKY
LHREPWNDRARYLLILTYVQKARKEGYPQHLCTIIERLICVALSDEFCSRQESSYEYQRF
QLLLCAAEVCLQFGNHIGCVRHAKSASELLLPDDSLFFAHILLCRAYAAQDNFVDMRKEY
TRCLELKTDYPIGWVCLKIIDCQYKLQTDGTFLAVGFEECSRDVKKSWNMWMAVGDLVHG
LVAIQTKDLLAAEKFLAQACSLAGDESCLFLCHGTVCMQLAKQQCDARFLSVAVRSLQKA
RETSVMLPIVSLLLAQAEASLGSKMKWEKNLRDEWFSWPPGMRPAELYFQMHLLAKQERE
SSRSSSLIESSQSALRWVLQAIHLNPSCLRYWKVLQTFTG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggatggggggaaagattgcgaagctgttgcaaggagaagacacttggaagagttgtta
aactccgaaccagatgattcatccctccattttaaactcggaatattactgtgggaagag
ggagaagagtcaaaagcagcagagcattttgtaacttgcgcaaagctcaacccccaggaa
gctgctgctttcaggtatttgggtgattattactcgcgattggactacgaccagagccag
aaccagagggctctcaagtgctaccaacgagccctcctcctcgatcctgatgattccctt
tccggggaagctatctgtgatttgttggaccaacaaggtaaaatctccttgcagtttgcc
atctgcactcaagcttccgataagtccccgagagccttttgggcttttcgaagattggga
tttcttcaggtccatcaaaagagatggtctgaagctgtgcagaaacttcagcatgccatc
cgtggctatcccacctgtgccgatctctgggaggccttgggtctagcctaccagagactg
ggcatgttcactgctgcaatcaagtcatatggaagagctattgagttagaggagtcaaga
atctttgccttgattgaaagcggaaacatttccttgatgctaggttcttttagaaaggga
gttgagcattttaggcaagctttgttgatttcgcctgaaaatttagctgcgcattatggg
ctagcttcttctctacttggtttggctaaggaatgcataaattcaggtgcatttagatgg
ggagcttcactattggaggaggcttctgaagtaattgtatcgattatgacattagctggt
aacatatcatgtatctggaagctgcatggtgacattaagctattctatgccaaatgtttt
ccctgggtggatgatgggtggggcttaaaagccgaccaaaaaagtttcagcgactcaatc
atttcctggaaaagaatttgccatctagctgctgtatcttcatctcgttcttatcagcgg
gctctgcacttggcaccttggcaatctaatttgtacacagacattgccatagcatcagat
attactttcttttcaaaagagaatcatgaagaggacctgaactcttggtcacaagctgag
aagatgtgcttagggggcttattacttgagggagaaaataatgagttctgggtgacatta
ggatgtttatcagatcataatgccttgagacaacatgcttttattcgtgggctgcagttg
gatgtttcactggctgttgcttgggcatatcttgggaagctctacaggctagagggtgaa
aggaaactggcccagcaagcatttgatcgtgctagaagcatagatccctcacttgcatta
ccttgggctggaatgtcagctgatgctgatattaggaatctcaaaccggatgaagcatat
gactgctgtctacaagccgtgcagatcttgcctcttgcagagtttcagattggtcttgca
aagcttggtttgtattctggtcaaatgccatcttctgaggtatttagagccatcaggcag
gctttgcagcgtgcaccccattatcctgaatctcacaatttgaatgggctaatatgtgaa
gcacgatctctttatcaaagtgctagtgcatcttttaggctagcacgccatgcagtgagc
tctttttctggcaaagtatcaaaattgtatcataaagatatttcaatgaaccttgtgagg
tctctttgtaaggcagggagtcccaatgaagctgttgaagagtgtgagttactgaagaaa
gaaggactgcttgatctggagggcttgcagatttatgctttatgtctgtggcaacttggc
aagaatgatctggctttattgacagctaggacacttgctgcaaatattttatcaatggat
agtagaaaggctgctgctactataagtttcatcagcagattgatgtattatatttctgga
caagattcagttattagcagcatcttgaagatgcccaaggacttgtttcagagttcaaaa
gttagtttcatagtatctgctattgacgcactagattgtagcgatcagcttgggccaatt
gtttctcacagtcatagatctcttatgtcaagtgaagagattacatcaatgcactcccta
atagcgcttggtaaactagtgaaatatgtgtcagatgacagccttggaattcagaatgga
gttgatcacctgagaaaagctcttcacatgtatccacacagtggtttgataaggaatctc
cttagttatctattactattcagcgaggaatggaaagatgttcatcttgcaactagatgt
tttatcgttgactcttatgaccatcaaaaggaaaaggttttaaaatccagctttgagatt
cttggtgccggtgctgttgcttgttatactaagggaaggtgcagtgatgaattctcattc
tccaccagtaaagagcaatgcctttttggaactggaaaaatccagcagctacagaagtat
ttgcatcgagaaccttggaatgatagagcaaggtacttgcttatacttacttatgtgcag
aaggcacgtaaggagggatatcctcaacatctttgcactataattgaacggctaatatgt
gtggctctttctgatgaattctgttcaaggcaagaaagctcttatgaatatcaaaggttt
cagcttctgctttgtgctgcagaagtttgcttgcagtttggcaatcatattggctgtgtg
agacacgctaagagtgcttcagagcttttgcttcctgatgactctctcttttttgcgcac
attttactttgtcgtgcctatgctgcacaagataattttgttgacatgcgcaaagagtat
acaagatgtttagaactcaaaactgattacccaattgggtgggtttgtcttaagataatt
gactgtcagtataagctacagactgatggcacctttttagcagtaggcttcgaggagtgc
tccagagatgtcaagaaatcctggaatatgtggatggctgttggtgatttggtccatggt
cttgttgctattcaaacaaaagatctcctagctgcagaaaagttcctagcacaagcctgt
tcattagccggtgatgagagctgcctttttctctgtcatggtactgtctgcatgcagcta
gccaaacagcagtgtgatgctcgattcttgtctgtggctgttagaagtcttcagaaagcc
agagaaacttctgttatgttacctattgtctcactactgttggcacaagcagaagcaagc
cttggctctaaaatgaagtgggagaaaaaccttcgcgatgaatggttttcttggccacca
gggatgaggcctgcagaactctattttcaaatgcatttgctagctaagcaggaaagagag
agttcaagatcttcttctcttatagagtcttctcagagtgctctaagatgggttcttcaa
gcaatccatttgaacccttcttgtttgagatattggaaggttttgcagacctttacaggg
taa
DBGET
integrated database retrieval system
