Coffea arabica (coffee): 113712351
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Entry
113712351 CDS
T11342
Name
(RefSeq) coatomer subunit alpha-1
KO
K05236
coatomer subunit alpha
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
carb04131
]
113712351
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
carb04147
]
113712351
Membrane trafficking [BR:
carb04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
113712351
Exosome [BR:
carb04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113712351
Exosomal proteins of bladder cancer cells
113712351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
TPR_COPA_B
EIF3I
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_Aladin
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Fis1_TPR_C
TPR_P4H
Zn_ribbon_19
zf-Tbcl_FmdE
Motif
Other DBs
NCBI-GeneID:
113712351
NCBI-ProteinID:
XP_027091542
UniProt:
A0A6P6UPC4
LinkDB
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Position
10e:1671380..1678015
Genome browser
AA seq
1217 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHMNNVSCVLFHARQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILAAHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDSLLYVKDRFLRIFEYSTQKDTQLIPIRRPG
SNSLNQGPRTLSYSPTENAALICSDMDGGSYELYIVPKDNYGRGETVQEAKRGIGGSAVF
VARNRFAVLEKSSNQVAVKNLKNDTVKKSPLPIATDAIFYAGTGNLLCRAEDRVVIFDLQ
QRLVLGELQTSFIRYVVWSQDMESVALLSKHSIVIADKKLVHRCTLHETIRVKSGAWDDN
GVFIYTTLTHIKYCLPNGDSGIIKTLDVPIYITKIYGNTIFCLDREGKNRPIIIDSTEYI
FKLSLLRKRYDQVMSMIRNSELCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNI
QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNLEKLSK
MMKIAEVKNDVMGQFHDALYLGDIQERVKILENAGHLPLAYITASVHGLHDVAERLAADL
GDNVPTLPKGKSASLLIPPKPVLCGGDWPLLMVTRGIFEGGLDNAGKGAQEDYEDAADAD
WGEALDIGEVENIQNGDISMVLDEDEVQEDNEEGGWDLEDLDLPPDADTPKTASNARSSV
FITPTNGMPVSQIWVQKSSIAAEHAAAGNFDTAMRLLSRQLGIRNFAPLKPLFIDLQSGS
HTYLRAFSSAPVITVAVERGWSEAASPNVRGPPALVFNFSQLDEKLKAGYKATTSGKFTE
ALKLFRSILHTIPLIVVETRREVDEVKELIVIAKEYVLGLQMELKRRELKEDPVRQQELA
AYFTHCNLQLPHSRLALLNAMLVCYKAGNLSTAANFARRLLDTNPTNENQARNARQVLQA
AERNMKDVSQLNYDFRNPFVTCGATYVPIYRGQKDVICPYCGTHFVPSQQGQLCTVCDLA
VVGADASGLLCSPSQMR
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttaaccaagttcgaaaccaagagtaatcgagtgaaggggttgagctttcatagcaag
cgaccatggatcttggccagtcttcatagtggtgtgatccagctatgggactatcgtatg
ggcactctcattgatcggtttgacgagcacgatggccccgtgcgtggcgtccatttccat
aaatctcaacctctctttgtctccggaggagatgattataagatcaaggtttggaattac
aagctgcataggtgtttgtttaccctgcttgggcatcttgattacattcgtactgttcaa
tttcaccacgagtatccatggattgttagtgcaagtgatgatcaaacaatcagaatatgg
aactggcagtctcgaacttgtatctctgttttgactgggcacaaccactatgtgatgtgt
gcctcattccatcccaaggaggacttagttgtgtctgcttctttggatcagaccgttcga
gtgtgggatattggtgccctgaggaagaaaacagtgtcccctgctgatgacatcctcaga
ttgagtcagatgaacacagatttcttcggtggtgtcgatgcagttgtaaagtatgtccta
gagggtcatgatcgaggagtgaactgggcttcattccatcccactctccctttgattgtc
tctggtgctgatgatcgccaagttaaaatctggcgaatgaatgacacaaaagcttgggaa
gttgacacattgagagggcatatgaacaatgtgtcatgtgttctattccatgcaagacag
gacattattgtctcaaattcagaagataagagcatacgagtgtgggatgctacaaagaga
acaggtcttcagactttcagaagggaacatgaccgattctggatccttgcggctcaccct
gagatgaatcttctagctgccggtcatgacagtggcatgattgtattcaaactggagagg
gaacgccctgcattttctgtgagtggtgattctctgctttatgtgaaagatcgcttcctg
cgcatttttgagtactcaactcagaaggatactcagttgataccaattaggaggcctggt
tctaacagcttaaatcaaggcccccgcactctttcctacagccctactgaaaatgctgct
ttaatatgttcagacatggatggaggttcttatgagctctatattgtaccgaaagacaac
tatggtagaggtgaaactgttcaagaagccaaaagaggtattggaggttcagcagttttc
gttgctcgaaatagatttgctgtgcttgagaagagcagcaaccaagtggcggtcaagaat
cttaagaatgatactgtgaagaagagtcctcttcctattgctacagatgcaattttttat
gcaggcacaggaaacttgctgtgtagggcagaggaccgagttgtcatttttgacctccaa
cagcgcttggtacttggggaacttcagacttctttcatcaggtatgtagtctggtcacag
gacatggaaagcgttgctttgctcagcaagcactcaatagtcatagctgataagaaactt
gttcatcggtgtactcttcacgagacaatccgtgtcaagagtggagcttgggatgataat
ggtgttttcatatacacgacactaacgcacatcaagtattgccttcctaatggggacagt
ggaattattaaaaccctggatgtccctatatacatcactaaaatatatggcaatacaatc
ttttgcctggatcgagaaggcaaaaatcgtcctattattattgattcaaccgagtacatt
tttaagctgtctctgctaaggaagagatatgaccaggtcatgagtatgattaggaactca
gaactctgtgggcaagccatgattgcttatttgcagcagaagggatttccagaagttgct
ctgcattttgtaaaggatgagcgaactcgattcaacttggctctcgaaagtggaaacatc
cagatagcagttgcatctgctaaagagattgatgagaaagatcactggtacaggctaggg
gtggaggcccttcgtcagggtaatgctggcatagttgaatatgcatatcagaggacgaag
aacttcgagaggctgtcattcctttatttgataacagggaatttggaaaagttgtccaaa
atgatgaaaattgctgaagttaagaatgatgttatgggccagttccatgatgctttgtac
ctgggtgatatccaagaacgtgtcaagattttggagaatgctggtcatttgccccttgca
tacatcacagcctcagtccatgggcttcatgatgttgccgagcgtctcgctgcagatctg
ggagataacgtcccaactttgcccaaggggaaatctgcttcactcttgattcccccaaaa
cctgtgttatgtggtggagattggcccttgttgatggtcacgagagggatctttgagggt
ggtcttgataatgctgggaagggtgcacaagaggactatgaagatgccgcagatgctgat
tggggcgaggctttggatattggtgaagttgaaaacatccagaatggtgacatcagtatg
gtcttggatgaagatgaagtgcaggaagacaatgaggagggaggatgggatcttgaggat
ctggatctgccacctgatgctgatacgcctaagactgcttcaaatgcacgttcatctgta
ttcataacaccaactaatggaatgcctgttagccagatttgggttcagaaatcatccatt
gccgcagaacatgctgctgctgggaattttgacactgcaatgcggttactgagccgacaa
ttaggaataagaaattttgctcctttgaagccattgtttattgatcttcagtcaggcagt
catacttatctgcgtgccttctcctctgcaccagtgattactgttgcagttgaacggggt
tggagtgaggcagcaagtcctaatgtgcggggtccacctgcccttgtgttcaacttttct
cagctggatgagaaactgaaggctggctacaaggccacaacttctggaaagttcactgaa
gcactgaaactatttcggtctattctgcatacaattccccttattgtagttgagactcgg
agagaagtggatgaagttaaggaattgattgttattgcaaaggagtatgttctaggtttg
caaatggagctaaaaaggagggaattgaaggaggatcctgttcgtcagcaggagctagct
gcctacttcactcattgcaatctgcagctcccccattctagacttgccctattgaatgcc
atgcttgtttgctacaaggctggcaacctcagcactgcagcaaactttgctaggcgcctc
ttggacaccaatccaacaaatgaaaaccaggccaggaatgctcgtcaagttcttcaggct
gcagagagaaacatgaaagatgtttctcagctgaattatgacttcagaaacccctttgtg
acctgtggagccacgtatgttcccatataccgtggacagaaggatgtcatctgcccttat
tgcggtacccattttgttccatcacagcaggggcaattatgtactgtgtgtgatcttgct
gttgttggagctgatgcatctggccttctttgctctccttcacaaatgcgatga
DBGET
integrated database retrieval system
