Coffea arabica (coffee): 113712415
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Entry
113712415 CDS
T11342
Name
(RefSeq) replication factor C subunit 3
KO
K10756
replication factor C subunit 3/5
Organism
carb Coffea arabica (coffee)
Pathway
carb03030
DNA replication
carb03410
Base excision repair
carb03420
Nucleotide excision repair
carb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113712415
03410 Base excision repair
113712415
03420 Nucleotide excision repair
113712415
03430 Mismatch repair
113712415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
carb03032
]
113712415
03036 Chromosome and associated proteins [BR:
carb03036
]
113712415
03400 DNA repair and recombination proteins [BR:
carb03400
]
113712415
DNA replication proteins [BR:
carb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
113712415
DNA Replication Termination Factors
ELG1-RFC complex
113712415
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
113712415
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
113712415
Check point factors
HRAD17(Rad24)-RFC complex
113712415
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_lid_RFC1
AAA_assoc_2
AAA_22
AAA_16
AAA_11
AAA_5
AAA_14
ATPase_2
DUF815
DNAX_ATPase_lid
RuvB_N
nSTAND_NTPase5
AAA_7
AAA_3
AAA_30
nSTAND3
bpMoxR
ResIII
AAA_24
AAA_19
AAA_28
IstB_IS21
RNA_helicase
AAA_18
P-loop_TraG
TniB
SLFN-g3_helicase
AAA_2
AAA_25
TIP49
Mg_chelatase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
113712415
NCBI-ProteinID:
XP_027091633
UniProt:
A0A6P6UMC0
LinkDB
All DBs
Position
10e:42946389..42952970
Genome browser
AA seq
368 aa
AA seq
DB search
MAEEISFMEIDDDQNNTNTAAIVTTTVKNKGKNVIVSTGTGPKATPWVEKYRPQSLADVA
AHRDIVDTIDKLASTNRLPHLLLYGPPGTGKTSTVLALARKLYGSQMHNMVLELNASDDR
GIDVVRQQIQDFASTQSISFGVKFSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFAL
ICNHVNKIIPAVQSRCTRFRFAPLETYHVSERLNHVIKAEGLDVTDSGLKALVRLCNGDM
RKALNILQSTHMASQQITEEAVYLCTGNPLPRDIEQISHWLLNEPFAVSWRKISEIKTRK
GLALVDIIREVTMFVFRIRLPSDVRVQLINQMADIEYRLSFGCNDKLQLGSLISAFAQAR
SAVVAAAK
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggaaatctccttcatggaaatcgacgatgaccagaacaacaccaacaccgcc
gctattgtcaccaccacggtgaaaaacaagggcaagaacgttatcgtctccactggcact
ggcccaaaagccacaccttgggtcgaaaagtaccgccctcaatcccttgctgacgtcgcc
gctcatcgcgatatagttgacaccatcgacaagcttgctagtactaatagattaccacat
ttgctgctttatgggccacctgggactggaaagacatcaactgttctggccctggctcgg
aagctttatgggtcacaaatgcataatatggttttggagcttaatgcatcggatgatcga
gggattgatgtggtgaggcaacagattcaggactttgctagcactcaaagcatctctttt
ggtgtgaagttttctgtgaaattggtgctgttggatgaggctgatgccatgacaaaagat
gcgcaatttgctcttcgtcgagtgattgagaaatataccaaaaacaccagatttgcctta
atctgtaatcacgtcaacaagattattccagcagttcaatcgagatgtacacgattccgc
tttgctccacttgaaacttatcatgtcagtgagcggcttaaccatgttattaaggctgaa
gggcttgatgtaactgacagtggcctgaaggctcttgtacggctttgcaatggagatatg
agaaaggctttgaatattttgcagtcaacgcatatggcttcccagcaaataactgaagaa
gctgtgtacttatgcactgggaatccgttgcctagagatatcgagcagatttcacactgg
ctcctgaatgagccatttgcagttagctggaggaaaatttctgagatcaagacgagaaag
ggcttggcccttgtggatattataagagaagtaaccatgtttgtttttaggatcaggttg
ccatcggatgttcgagttcagctgataaatcaaatggctgacattgagtacaggttgagc
tttggctgtaatgataaactgcagcttggatcacttatatctgcttttgctcaagcacga
tctgctgtggttgccgctgcaaaatag
DBGET
integrated database retrieval system
