Coffea arabica (coffee): 113712469
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Entry
113712469 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X2
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113712469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113712469
03400 DNA repair and recombination proteins [BR:
carb03400
]
113712469
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
113712469
Messenger RNA biogenesis [BR:
carb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
113712469
DNA repair and recombination proteins [BR:
carb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
113712469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-GeneID:
113712469
NCBI-ProteinID:
XP_027091714
UniProt:
A0A6P6UMH4
LinkDB
All DBs
Position
1e:50750866..50761949
Genome browser
AA seq
913 aa
AA seq
DB search
MESVLKKYFGFSTFRPYQKEIVDKILDGRDCLVVMATGSGKSLCYQMPPLITKKTAVVIS
PLISLMQDQVMTLKERGIKTEHLSSAQSASRVQSAAESGQYDILYMTPEKACLLPSSFWS
RMLKTGICLLAVDEAHCISEWGHNFRIEYKKLDKLRDMLLDVPFVGLTATATEKVRLDII
SSLKMRDPHVTVGSFDRKNLFYGVKSFNHGSPFVDELVEEISKYVESACSTIVYCTTVKD
AEHIFKSLLKVGIKAGVYHGQMPNCAREESHRSFIRDEYYVMVATIAFGMGIDKPDIRYV
IHYGCPKSLESYYQESGRCGRDGVASVCWLYYTRSDFIKADFYCREANSADQRKAIMDSF
VAAQHYCFLTTCRRKFLLDYFGQICTFDKCGNCDNCTSSRKETDMSREAFLLMACIRSCG
GQWGLNMPVDVLRGSQSKKILDAQFDKLPFHGLGKEMTVNWWKFLANQLIVKGYLVEKYA
DVYRSISVGPKGLQFLSSCRPDYQPPLYVAVTSEMIGDVENKFPTDEARDFGGLISAGFE
GMSQAEAQLYKLLLEERLKLARVSGTAPYAICGDETLRRIALTRPSTRARLANIDGVNQH
LMKVHGDHFLQRIQQLSQELNITLDGLPNSQPPAPKEVLKVPKAANLAPAKSEAWRKWQE
DGLTIQKIANFPGRSAPIKEQTVAEYILEAAREGCVIDWLRFSREIGLTQEVYKSIQQAV
LKVGKEKLKPIKNELAEEVTYSQIKTCLTMQELGLGMSEIESINQHDCKEDEHLNGKPLL
SERTNLSHQKEEQFENFQFVNGVRDSAGLRNEDAISDSSIQSRSMEESVDSSNDPPLTRK
RQKIDALDVPAEVMVEATETSIIRWLGKFDHGVPLSDILGHFNGSTESSVIDLLNSLEGE
FLIFKKNDLYMLM
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggagtctgtccttaagaaatattttgggttttcaacatttcggccatatcagaaagaa
attgtggacaaaatattggacgggagggattgcttggtggtcatggccactgggagcggc
aagtcactatgctatcaaatgccaccattgatcaccaaaaagactgctgtagtaattagc
cctcttatatccttaatgcaagatcaggtaatgacattaaaggagaggggcattaaaact
gagcatctttctagtgctcagagtgcttcgagagtacaaagcgctgctgagagtggtcaa
tatgacattctctatatgactccagaaaaagcttgcttgcttccttccagcttctggtcg
agaatgctgaaaacagggatatgtcttctggctgttgatgaagcacactgcatttcagag
tggggccataatttccggattgagtacaaaaagttggataagttgcgtgatatgctatta
gatgttccctttgttggcttaactgcaactgctacagagaaagtccgtcttgatatcatc
agctccttgaagatgagggatcctcatgttactgttggctcttttgatcgtaaaaatctc
ttttatggcgttaaatctttcaaccatggttcaccttttgttgatgagcttgtggaagaa
atatctaaatatgtagagagtgcatgctcaacaattgtgtactgtacaactgtcaaagat
gctgaacatatctttaagtcacttctcaaggttggaattaaagctggggtctaccacggt
caaatgcctaattgtgcacgcgaggagtctcacaggtcatttatcagggatgaatactat
gtcatggttgctactattgcttttggcatgggtatagataagccagatatcaggtatgtg
atacattacggatgcccaaaaagtttggaatcttattatcaggagagtggtcgatgtggt
cgagatggtgttgcttcggtctgctggctttattacacaagaagtgacttcataaaagct
gatttttattgtagagaagcaaactcggcagatcaaagaaaagctataatggactctttt
gtagccgcacaacattattgcttcttgacaacttgtagaagaaaatttctattggactac
tttgggcaaatttgcacttttgacaaatgtggaaattgtgataattgcaccagctccagg
aaggagactgacatgtctagagaagcatttcttctgatggcctgcattcgttcctgtggg
ggtcagtggggactcaatatgccagttgacgttcttcgtggttcacagtccaagaaaatc
cttgatgctcaatttgataagcttccatttcatggccttgggaaagagatgacagtgaac
tggtggaagtttctagcgaatcagttgattgtaaaaggttatttggttgagaagtatgcg
gatgtgtacagaagtataagtgtgggtcccaaagggcttcagtttctgagctcatgcaga
ccagattatcaaccaccattatatgtggcagtcacttctgaaatgatcggtgatgtggaa
aacaaatttccaacggatgaagctagagactttggtggtctgatatcggcaggatttgaa
ggaatgtctcaggctgaagcacaactttataaactgcttttggaagagagactgaaactt
gcaagagtcagtggaactgctccatatgcaatttgtggtgatgaaacactaaggaggata
gcattgacaaggccatcaaccagagcaagactagctaatatagatggagtaaaccagcac
ttaatgaaagttcatggtgatcattttcttcaaaggatccaacagctctctcaagaactt
aacattaccttggatgggcttccaaactctcaacctcccgctccaaaggaggttcttaaa
gtaccaaaagcggcaaacctggcaccagcgaagtctgaagcctggagaaagtggcaagaa
gatggccttacaatccagaaaattgcaaatttcccaggaagatcggctccaattaaggag
cagactgttgctgagtatattcttgaagctgcaagagagggatgtgtaattgactggctt
agattctctcgagagattgggttgacacaagaggtgtacaagagcattcagcaagctgtc
ctaaaagttggaaaagagaagttaaagcccataaaaaatgaattagcagaagaggtaact
tattcccaaatcaagacatgcttgacaatgcaagaattaggacttggcatgagcgaaatt
gaatccattaatcagcatgactgcaaggaggatgaacatttgaatgggaaaccattattg
tcagaaagaactaacctctcgcatcaaaaggaagaacaatttgagaattttcaatttgtt
aatggagtccgtgactcggctgggttaaggaatgaagatgcaatttctgacagctctata
cagagcagaagcatggaagaatctgtagattcttcaaatgatccacctcttacaaggaaa
cgccaaaagattgatgccttggacgtaccggctgaagttatggtagaagcaaccgagact
tcaattatacgctggcttgggaagtttgatcatggggtaccactttctgatatcttgggg
cacttcaatggatcaacggagtcatctgtgattgatctgctaaacagcctagaaggtgaa
tttttgatatttaaaaagaatgatctgtatatgctcatgtag
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