Coffea arabica (coffee): 113712682
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Entry
113712682 CDS
T11342
Name
(RefSeq) protein PIR-like isoform X1
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113712682
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113712682
Factors involved in mRNA localization
Other mRNA localization factors
113712682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
Motif
Other DBs
NCBI-GeneID:
113712682
NCBI-ProteinID:
XP_071924433
UniProt:
A0ABM4VY36
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Position
10c:complement(44979327..45009806)
Genome browser
AA seq
1285 aa
AA seq
DB search
MAVPVEEAIAALSTFSLEDDQPEVQGPGFWVSTERAATTSPVEYSDVAAYRLSLSEDSKA
INQLNVLIQEGKEMGSVLYTYRSCVKALPQLPDSMKQSQAELYLETYQVLDLEMSRLREI
QRWQASASSKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQIDHLKNAKASIPNDF
SWYKRTFTQVSVQWQETDTMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIV
FAVESLELDFALLFPERHILLRVLPVLVVLAASSEKDSESLYKRVKINRLINIFKNDPVI
PAFPDLHLSPAAILKELSVYFPKFSSQTRLLTLPATHELPPREAQDYQRHYLIVNHIGAI
RAEHDDFSIRFASSMNQLVLLRSIDSADIEWVKEVKGNVYDMVVEGFQLVSRWTSRIWEQ
CAWKFSRPCKDPVLTESNGTPTSFSDYEKVVRYNYSAEERKALVELVSYIKSIGSMLQKV
DTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTSKPE
SDLQSFPHAGEESKVNFFYPRPVAPTAAQVHCLQFLIYEVVSGGNMRKPGGLFGNTGSEI
PVNDLKQLETFFYKLGFFLHVIDYTATVATITDLGFLWFREFYVESSRVIQFPIECSLPW
MLVDHVMESQTMGLLESILMPFDIYNDAAHQALVVLKQRFLYDEIEAEVDNCFDIFVSKL
CDSIFTYYKSWAASELLDPSFLFALDIGEKFSLQPMRYTALLKMTRVKLLGRTIDLRSLI
AARMNKVFRDNIEFLFDRFESQDLCAIVELEKLLSALQLAHELLSKDLTIDSFNLMLNEM
QENVSLVSYSSRLASQIWTEMQNDFLPNFILCNTTQRFVRSSRVPLVPVQKPSVPYAKPN
FYCGTQDLNSAYQSFARLHSGFFGIPHMYSIVRLLGSRSLPWLIRALLDHLSNKITSLEP
MVTGLQEALPKSIGLLSFDGGVTGCMRIIKEHLNCWQSKTEIKAEVFHGIKEVGSVLYWM
GLLDIVLREVDTINFMQTAPWLGLIPGTDGQILQSEEAGESPIVTLFKSTSAAVLSDPGC
LNPKSFQTISRQAEAADLLYKANINTGSVLEYALAFTSAALDKYCSKWSAAPKTGFVDIT
TSKDFYRLFSGLQIEYLEDSVQMQPNNQEMLGDSVAWGGCTIIYLLGQQLHFELFDFSHQ
VLNVAEVEAVTPTHKNAHSVQALEGLLEAMKKARRLNSHVFSMLKARCPLEDKQACAIKQ
SGAPLHRIKFENTVSAFETLPQRSS
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggccgttcccgtcgaagaagctattgctgctctctccacattctcattagaggatgat
caaccggaagttcaaggcccagggttttgggtttctactgaaagagctgcaactactagt
ccagttgaatatagtgatgttgccgcttatcgtctctctttgtcagaagactcaaaagct
attaatcagctgaatgtgttaatacaagaaggaaaggaaatgggatcagtgctttatact
taccggagttgcgttaaagcacttcctcagcttccagattctatgaagcaaagccaggct
gaattgtatttagaaacttatcaagttcttgatttggaaatgagccgtctacgtgaaatt
caacggtggcaagcgtcagcttcctctaagctagctgccgatatgcaacgattttctagg
cctgagaggcgtatcaatggccctaccataacccatctttggtctatgttaaaattactt
gatgttttggtccaaatcgatcatcttaaaaatgcaaaggcaagcattcccaatgatttt
tcttggtataagaggacatttactcaagtgagtgtacagtggcaagaaactgacactatg
agggaagaattagatgatttacagatcttcttgagcacgaggtgggcaatactgctcaac
ttgcatgttgaaatgtttcgtgtaaacaatgttgaagacattctgcaggttctcatagtt
tttgctgttgagtcgctggagttggattttgcccttctgttccctgagcggcacattctt
cttcgtgtacttcctgttcttgttgtcttagctgcatcatcagagaaagatagtgagtca
ctgtataagagggtgaagatcaacagattgataaatatattcaagaatgatccggttatc
cctgcatttccggaccttcatctttctccggcagcaattctaaaagagttgtcagtgtac
ttccctaaattttcatctcaaactcgtcttctcactcttccagcaactcatgagctgcca
ccacgcgaggcacaagattatcagcgacactatctcatcgtcaaccacattggggccata
cgtgctgagcatgatgacttctctatacgttttgcttcatctatgaatcagcttgtgtta
ctgagatcaatagatagtgcagatattgagtgggtgaaggaagtaaaaggaaatgtttat
gatatggttgttgaaggttttcaactcgttagtagatggacttcacgcatttgggaacaa
tgtgcatggaaattttctcgtccatgcaaggatcctgttctgacagagtctaatgggaca
ccaacatcattttctgactatgaaaaggtggtacgatataattatagtgctgaggaaagg
aaagctttagttgaacttgtgagctacatcaaaagcattgggtcaatgttgcagaaggtt
gatacattggtggctgatgcattatgggagactatccatgcagaggtccaagacttcgtt
caaaacacgctggctactatgttacgcaccacctttcggaagaaaaaggatctttccagg
atactctctgacatgcggacgctttcagctgactggatggcaaatacaagtaaacccgag
tcagatttacaatcatttccccatgcaggtgaagaaagcaaagtgaacttcttctatcca
aggcctgtagcaccaacagctgcacaggttcattgcttgcagtttctaatatatgaggtg
gtatcgggtggaaatatgaggaaaccaggtggtctatttgggaatactggttctgaaatt
cctgttaatgacttgaaacagctagaaacgttcttctacaagcttggatttttcctgcat
gtaatcgattatacagcaacagttgccacaatcacagatcttggtttcttatggtttagg
gaattttatgtggaatcttctcgtgttattcagtttccaatcgaatgctctcttccttgg
atgcttgtggatcatgttatggagtctcaaaccatgggtcttcttgagagtatcttaatg
ccatttgacatctataatgatgctgcccatcaagctttggttgtcctcaagcagcgtttc
ctctatgatgaaattgaagcggaggtggacaattgctttgatatatttgtttcaaagttg
tgtgactctatttttacttactataagagctgggcagctagtgaattacttgatccttct
ttcctctttgcactggatattggtgaaaagttttcactccaaccaatgagatatactgcg
cttctgaaaatgactagagtgaagttgcttggacggacaattgacctgagaagcttgatt
gctgcaagaatgaacaaagtattcagagacaacattgaatttttatttgaccgctttgag
tctcaggatttatgtgctattgttgaattggaaaaacttctcagcgccttacaacttgct
catgaattactgtcgaaagatcttacaatagattcatttaatcttatgctcaatgaaatg
caagagaatgtgtccctcgtttcctactccagtcggcttgcttctcagatatggacagag
atgcaaaatgacttcctgccaaacttcatcctatgcaacacaactcagcgttttgttcga
tcatcaagagttcctcttgttcctgttcagaagccatcggtcccctatgcaaagcctaat
ttctactgtggtactcaggatctgaattcagcataccagagttttgctcgattacatagt
ggattttttgggatacctcacatgtactccattgttaggctgctgggttctaggtcactg
ccttggcttatccgagctctattagatcatttatcaaataagataacgtcgcttgagcca
atggttacaggtttgcaagaagctttacccaagtctatcggactcctttcttttgatggt
ggtgtgactggttgtatgaggatcattaaagaacatcttaactgctggcagtcaaagaca
gaaatcaaagcagaggtttttcacggaatcaaggaggttggaagtgtgttgtactggatg
gggcttcttgacattgttctgagggaagtggatactatcaatttcatgcagacagcccct
tggctgggcttgatacctggtactgatggacagatcttgcagtctgaggaagcaggagaa
agccctattgtcactctctttaaatcaacaagtgctgctgttttgtcagaccctggctgc
ttaaatccaaaatcatttcaaaccatatccagacaagcagaagctgctgatcttttgtac
aaggccaatataaatactggaagtgttctggaatatgcacttgctttcacaagcgcagct
ctagataaatactgtagcaaatggagtgcagctccaaagacggggtttgtcgacattaca
acttcgaaggacttctatcgtttattcagtggcctccaaattgaatacttggaggattct
gttcagatgcagccaaacaatcaagaaatgttgggtgattcagttgcttggggtggctgt
actatcatctacttactcggccaacaattacattttgagctttttgatttttcccaccaa
gtcctcaacgtggcagaggtggaagcagtcaccccaacccacaagaatgctcattctgtc
caggcgttggagggcctattggaggctatgaagaaggcaaggcgtttgaatagccatgtc
ttttcaatgttgaaggctcgctgcccactggaagataaacaggcttgtgctatcaagcaa
agtggggcaccattacatcgcattaaattcgagaacactgtttctgcttttgaaacgtta
ccacaaagaagttcctaa
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integrated database retrieval system
