KEGG   Coffea arabica (coffee): 113713607
Entry
113713607         CDS       T11342                                 
Name
(RefSeq) DNA ligase 1-like isoform X3
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
carb  Coffea arabica (coffee)
Pathway
carb03030  DNA replication
carb03410  Base excision repair
carb03420  Nucleotide excision repair
carb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113713607
   03410 Base excision repair
    113713607
   03420 Nucleotide excision repair
    113713607
   03430 Mismatch repair
    113713607
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:carb03032]
    113713607
   03400 DNA repair and recombination proteins [BR:carb03400]
    113713607
Enzymes [BR:carb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     113713607
    6.5.1.6  DNA ligase (ATP or NAD+)
     113713607
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     113713607
DNA replication proteins [BR:carb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    113713607
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     113713607
DNA repair and recombination proteins [BR:carb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     113713607
   NER (nucleotide excision repair)
    Other NER factors
     113713607
   MMR (mismatch excision repair)
    Other MMR factors
     113713607
SSDB
Motif
Pfam: DNA_ligase_A_N DNA_ligase_A_M RNA_ligase
Other DBs
NCBI-GeneID: 113713607
NCBI-ProteinID: XP_027093164
UniProt: A0A6P6URI3
LinkDB
Position
1c:complement(39497444..39503065)
AA seq 507 aa
MASRPSAFDLLMSNASKKKSEQKQQKSSPKKRKTPTPIITSQNSAPISVKEPDSAQIKEA
QLEKDMKNDDSSKVKDAQLGKSEEAVVKKPKVAITPDESFLELKDKVASFDPKKAAYWGK
GQRVPFMFVAKALDAISKESGQIAITAIVCNMLRTVMETTPEDLVAVVYLLANRIAPAHE
GLELGIGDASIIKALSEACGTKEAQIKKQYKELGDLGLVAKASRSSQSLMRKPEALTVVK
VFDTFRLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQAKLRIGLAEQTLLAAL
GHAAVYADKQSSTPANIDSSLEEAAKIVKQVYSVIPVYDKIIPALLADGVWDLPKTCSFS
PGVPVGPMLAKPTKGVSEILDKFQDIEFTCEYKYDGERAQIHYMEDGTVEIYSRNAERNT
GKYPDVVDAISRFKRPSVTSFVLDCEIVAFDREKKKILPFQVLSTRARKNVVLSEIKVGV
CIYAFDILYINGQPLLQAQLDSRRQVC
NT seq 1524 nt   +upstreamnt  +downstreamnt
atggcttctcgcccttctgccttcgacctcctcatgtccaatgctagcaagaaaaagtcc
gagcagaaacaacaaaaatcatctcccaagaaacgcaaaacccccacccccatcatcact
tctcaaaattctgctccgatttcagtcaaagaacctgattcagctcaaattaaagaagcc
cagctggaaaaagatatgaaaaatgacgattcgagcaaggttaaggatgcccagctgggg
aaaagtgaggaagcggtggttaagaaacctaaggtggcaattactcctgatgagagcttt
cttgagttgaaggataaggtggcaagttttgatcccaagaaggcggcatattggggaaag
ggacaaagggtgccgtttatgtttgtagcaaaggcgttggatgctatttctaaagaatca
gggcagattgcgataactgcaattgtttgtaacatgttgaggactgtgatggaaacgacg
ccagaggatttggtggctgttgtttaccttttggcgaaccgaattgctccagctcatgaa
ggattggagcttgggattggggatgcttcgattattaaggctctgtccgaggcgtgcgga
acaaaagaagcacaaattaagaagcagtacaaggagcttggtgatctaggccttgttgca
aaagcaagccgttcgtctcagtctttaatgcgcaaaccagaagcactaactgttgttaaa
gtttttgatacatttcgccttattgctaaggaatctggtaaggatagtcaagagaagaaa
aagaatcatatcaaggcactactggttgctgctactgattgtgaacctcagtacttgatt
cgtctgctccaggctaaactgcgcattggtttagctgagcaaactctgttagctgctttg
ggccatgctgcagtttatgctgataagcaatcttcaactcctgcaaatatagattcttct
ttagaagaggctgctaaaatcgtgaaacaagtttactcggtaattccagtctatgataaa
ataatccctgctcttcttgctgatggtgtatgggatcttcccaagacatgtagcttttca
cctggtgttcctgttggacctatgctagcaaaaccaactaagggagtttctgaaatattg
gataagtttcaggatattgaattcacctgtgaatacaagtatgatggagaacgtgctcag
attcactacatggaggatggtacagtggagatatatagtcgaaatgcagaaagaaacact
ggaaagtatcctgatgttgtggatgcaatttcaaggtttaaaaggccgtctgtaacctca
tttgttcttgattgtgaaattgttgcatttgatcgtgagaagaaaaaaattctccccttc
caggtcctcagcacacgggctcgtaaaaatgtggtcttgagtgaaataaaggttggtgtt
tgcatatatgcttttgatatcttgtatatcaatggccaacctcttctacaagcacagctt
gacagtcgaaggcaggtatgctaa

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