Coffea arabica (coffee): 113713822
Help
Entry
113713822 CDS
T11342
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
carb03015
mRNA surveillance pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113713822
09122 Translation
03013 Nucleocytoplasmic transport
113713822
03015 mRNA surveillance pathway
113713822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113713822
03041 Spliceosome [BR:
carb03041
]
113713822
03009 Ribosome biogenesis [BR:
carb03009
]
113713822
03012 Translation factors [BR:
carb03012
]
113713822
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113713822
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113713822
mRNA cycle factors
Stress granule specific factors
113713822
Spliceosome [BR:
carb03041
]
Complex C
Other components
EJC/TREX
113713822
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
90S particles
Helicases
113713822
Translation factors [BR:
carb03012
]
Eukaryotic type
Initiation factors
eIF-4
113713822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
NAT10_TcmA_helicase
Cas3-like_C_2
AAA_22
TniB
Utp25_C
Motif
Other DBs
NCBI-GeneID:
113713822
NCBI-ProteinID:
XP_027093409
UniProt:
A0A6P6US71
LinkDB
All DBs
Position
10c:8547324..8557579
Genome browser
AA seq
411 aa
AA seq
DB search
MAASGSVVPANRTRRGPVLDAGDESLVFETTRGVEPIMTFDAMGIQDDLLRGIYQYGFEK
PSAIQQRAVVPIISGRDVIAQAQSGTGKTSMIGLTVCQVVDTKSSEVQALILSPTRELAA
QTEQVIQAIGEFINVQVHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRA
IKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTDPVRIL
VKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLSAKMIEN
NFTVSSMHGDMPQKERDEIMKHFREGNTRVLITTDVWARGLDVQQVSLVINYDLPNNREL
YIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggctgcatcgggttcggtggtgccggcaaacaggacccgtcgaggtccggtgcttgac
gccggcgatgagtcgctggtgttcgagacgaccaggggtgtggagcccatcatgaccttc
gacgcaatgggcatacaagatgacttgttgagagggatttatcaatacggcttcgagaaa
ccctccgctattcaacaaagagctgtggttccaattatatctggccgtgatgtcatcgct
caggctcaatctggaactgggaaaacctcaatgattggcctaaccgtctgccaagtcgtt
gacaccaaatcttctgaggtgcaagccttgatattatcacccacaagggaattggcagca
cagacagagcaagtgatacaagcaattggtgaattcataaatgtacaggtgcacgcatgt
attggaggcaagagtgtgggagaggatattaggaagctagaacatggggttcatgtggtg
tctgggacgcctggcagagtttgtgatatgataaaaagaagaacactccgaacaagggct
attaagttgttgattcttgatgaatcagatgagatgttgagccgtgggtttaaggatcaa
atttatgatgtttacagatatcttcctccagaacttcaggtcgtattgatttctgctacc
cttccgaatgagattttggagataacgagtaaatttatgacagaccctgttcggatcctt
gtgaaacgtgatgaattgactctggaggggatcaagcaattctttgttgctgtggaaaaa
gaagactggaaatttgataccctatgtgatctttatgataccctaaccatcacccaggct
gttattttctgcaatacaaagaggaaggttgattggctaagtgcaaaaatgatagagaat
aatttcacggtctcgtctatgcatggagatatgcctcagaaggagcgagacgaaattatg
aaacatttccgagagggtaatactcgtgttcttatcacaactgatgtttgggcaaggggc
cttgacgttcaacaggtgtccctagtgattaattatgaccttcccaacaatcgagaactt
tacatccatcggattggtcggtctggtcgttttgggagaaagggtgttgcaataaatttc
gttaagagtgatgacatcaagattttaagagatattgagcagtactacagtacccaaatt
gatgaaatgccaatgaatgtggccgatctcatttaa
DBGET
integrated database retrieval system
