Coffea arabica (coffee): 113713829
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Entry
113713829 CDS
T11342
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113713829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113713829
Enzymes [BR:
carb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113713829
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113713829
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113713829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
TSTD2_N
Motif
Other DBs
NCBI-GeneID:
113713829
NCBI-ProteinID:
XP_027093421
UniProt:
A0A6P6UST0
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Position
10c:7655482..7669050
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AA seq
540 aa
AA seq
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MGLEWEVQVRFPSDTPVAGIELNPWVRVNYKGSYVSPPNYALQFAWYRELSTLPKCVEDY
VAFQDHASRDSSMTVYGGGLNQEKHGLLNSEDLKIVKGEGKTWIQVGSSRTYTPSEDDID
SSLRLVSVAIDDMGIKMSINVFVTTPVIRLPRPYPRHMIIFCSLRKFRNPKCIATPFKEE
SFRVLSYNILADLYTVSGAYTHCPNWALTWEYRRRNLLNEILSYDADILCLQEVQSDHFK
NFFEPEFAKLGYSAIYKRKTKEVYSANEYVIDGCATFFRHDRFKIVIKYEVEYDKMALPV
IEVLEPDKRNNGLFRLMKDNVALVVILEEKDNGRSPDAARSTICVANTHIHRGLDASDVR
LFQVVNLIRGLEKIDSSGIPILICGDMNSLPGSDPHRFLINGEVGCFSEKFRDPLGIHKH
LKLSHSMHLACAYAHLLDSNEVGQHQKEKMDYQAMEPLFTCFKPSLTGTLDYILYSKNRL
KVDGLLKLLDYDSLEKRLLPSPLWSSDHVALMANFRVKHASRGVQYLSPPPDPWEQKQTN
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggggttggagtgggaagtgcaagtccggttcccgtcggacacacctgtcgccggcatt
gagctgaatccatgggtccgtgtcaattacaaaggctcttacgtgtcccctcccaactat
gccctccagtttgcttggtacagagagctttctactttgcctaaatgtgtcgaggactat
gtagctttccaagatcatgcttctagagatagtagtatgactgtatatggtggtggattg
aatcaagaaaagcatggtttgctgaactctgaggatttaaaaattgtcaagggagagggg
aaaacttggattcaagtaggttcttcaagaacctatacaccttcagaggacgatattgac
tccagcctaaggctggtctctgttgccatagatgacatgggcatcaaaatgtcgattaat
gtctttgttaccactcctgtcattagattacctcgtccatatcctcgccatatgatcata
ttttgctccctcagaaaatttagaaatcccaagtgtattgccacacctttcaaagaagaa
agtttcagggtattatcttataatatcctagctgacctatataccgtaagtggtgcatat
actcactgccctaactgggcacttacatgggaatatcgtcggcgtaatttgctcaatgag
atcctttcttatgatgccgatatcctttgtcttcaggaggtgcagagtgatcattttaag
aatttctttgaacctgaatttgcaaaattgggttattcagctatttataagaggaaaacc
aaggaggtgtatagtgccaatgaatatgtaattgatgggtgtgcaacatttttccgccat
gaccgcttcaagatagttattaaatatgaggtagagtatgacaaaatggcactgcctgta
attgaagttcttgaacctgataaaagaaataatggtctttttcgccttatgaaggacaat
gttgcacttgttgtgatactggaggaaaaggacaatggacgttctccggatgctgctagg
tctacaatttgtgtggcaaatactcatatccaccgtggtttggatgcttctgatgtgaga
ctattccaagttgtcaatctcatcaggggacttgaaaagattgattcttcaggcattcct
attttgatttgcggtgacatgaattctcttcctggaagtgatcctcatcgcttcctcata
aatggcgaagttggatgttttagtgagaaattcagagaccctctgggaatacataaacat
ctgaaacttagccactcgatgcatctggcctgcgcatatgcacatttacttgattcaaat
gaagttgggcaacaccagaaggaaaaaatggattatcaagcaatggagcctcttttcacc
tgcttcaaaccaagtttaactggaacgttggactatattttgtactcaaaaaataggttg
aaggttgacgggctgttgaaacttcttgattatgatagtttggagaagcgattactgcct
tcacctctatggtcatccgatcatgttgccctcatggcgaatttcagagtcaaacacgcc
tccaggggggtacagtatttatcacctcctcctgatccgtgggaacaaaaacaaacaaac
tga
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