KEGG   Coffea arabica (coffee): 113714367
Entry
113714367         CDS       T11342                                 
Name
(RefSeq) DNA ligase 1 isoform X2
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
carb  Coffea arabica (coffee)
Pathway
carb03030  DNA replication
carb03410  Base excision repair
carb03420  Nucleotide excision repair
carb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113714367
   03410 Base excision repair
    113714367
   03420 Nucleotide excision repair
    113714367
   03430 Mismatch repair
    113714367
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:carb03032]
    113714367
   03400 DNA repair and recombination proteins [BR:carb03400]
    113714367
Enzymes [BR:carb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     113714367
    6.5.1.6  DNA ligase (ATP or NAD+)
     113714367
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     113714367
DNA replication proteins [BR:carb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    113714367
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     113714367
DNA repair and recombination proteins [BR:carb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     113714367
   NER (nucleotide excision repair)
    Other NER factors
     113714367
   MMR (mismatch excision repair)
    Other MMR factors
     113714367
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 113714367
NCBI-ProteinID: XP_027093977
UniProt: A0A6P6UWE4
LinkDB
Position
1c:complement(39470535..39479639)
AA seq 572 aa
MFVAKALDAISKESGRIAITAIVCNMLRTVMETTPEDLVAVVYLLANRIAPAHEGLELGI
GDASIIKALSEACGTKEAQIKKQYKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQA
KLRIGLAEQTLLAALGHAAVYADKQSSTPANIDSSLEEAAKIVKQVYSVIPVYDKIIPAL
LADGVWDLPKTCSFSPGVPVGPMLAKPTKGVSEILDKFQDIEFTCEYKYDGERAQIHYME
DGTVEIYSRNAERNTGKYPDVVDAISRFKRPSVTSFVLDCEIVAFDREKKKILPFQVLST
RARKNVVLSEIKVGVCIYAFDILYINGQPLLQAQLDSRRQHLYESFEEEPGFFQFATAVT
SNDLEEIQKFLEAAVDASCEGLIIKTLKKDATYEPSKRSNNWLKLKNDYMDSTGDSLDLV
PIAAFHGRGKRTGVYGAFLLACYDVNNEEFQSICKIGTGFSEAVLEERSASLRSKVIPKP
KSYYRYSDTINPDVWFEPIEVWEVKAADLTISPVHRAATGIVDSDKGISLRFPRLLRVRE
DKNPEDASSADMVADIYRAQKHNQSNRDDDEQ
NT seq 1719 nt   +upstreamnt  +downstreamnt
atgtttgtagcgaaggcgttggatgctatttctaaagaatcagggcggattgcgataact
gcaattgtttgtaacatgttgaggactgtgatggaaacgacgccagaggatttggtggct
gttgtttaccttttggcgaaccggattgctccagctcatgaaggattggagcttgggatt
ggggatgcttcgattattaaggctctgtccgaggcgtgcggaacaaaagaagcacaaatt
aagaagcagtacaaggaatctggtaaggatagtcaagagaagaaaaagaatcatatcaag
gcactactggttgctgctactgattgtgaacctcagtacttgattcgtctgctccaggcg
aaactgcgcattggtttagctgagcaaactctgttagctgctttgggccatgctgcagtt
tatgctgataagcaatcttcaactcctgcaaatatagattcttctttagaagaggctgct
aaaatcgtgaaacaagtttactcggtaattccagtctatgataaaataatccctgctctt
cttgctgatggtgtatgggatcttcccaagacatgtagcttttcacctggtgttcctgtt
ggacctatgctagcaaaaccaactaagggagtttctgaaatattggataagtttcaggat
attgaattcacctgtgaatacaagtatgatggagaacgtgctcagattcactacatggag
gatggtacagtggagatatatagtcgaaatgcagaaagaaacactggaaagtatcctgat
gttgtggatgcaatttcaaggtttaaaaggccgtctgtaacctcatttgttcttgattgt
gaaattgttgcatttgatcgtgagaagaaaaaaattctccccttccaggtcctcagcaca
cgggctcgtaaaaatgtggtcttgagtgaaataaaggttggtgtttgcatatatgctttt
gatatcttgtatatcaatggccaacctcttctacaagcacagcttgacagtcgaaggcag
catctttacgagtcatttgaggaagaacctggcttttttcaatttgctacagcagtaaca
tcaaatgatcttgaggaaatacagaagttccttgaagctgctgttgatgccagttgtgag
gggttgataattaagacattgaagaaagatgccacgtatgagccttccaagcggtcaaat
aactggctgaagttgaaaaatgattacatggatagtacgggtgactcactggatttggtt
cccattgctgctttccatggccggggaaaacgtactggtgtttatggagcctttctcctt
gcttgttatgatgtcaacaacgaagaattccagagcatatgtaaaattggcactggattt
tctgaagctgtgcttgaagagcgctctgccagcttgcgctctaaagttattcccaagcca
aagtcttattaccggtactcagatacaatcaatccagatgtatggtttgaacctattgag
gtttgggaggtaaaagctgctgatctgactatcagtcctgttcatcgtgctgctactggt
attgtggattcagacaagggaatttctcttcggtttccacgtttactacgggttcgagaa
gataagaatccagaggatgcctcttctgctgatatggtagcagatatttatagagctcag
aaacacaatcaaagtaaccgcgatgatgatgagcaataa

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