KEGG   Coffea arabica (coffee): 113714368
Entry
113714368         CDS       T11342                                 
Name
(RefSeq) DNA ligase 1-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
carb  Coffea arabica (coffee)
Pathway
carb03030  DNA replication
carb03410  Base excision repair
carb03420  Nucleotide excision repair
carb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113714368
   03410 Base excision repair
    113714368
   03420 Nucleotide excision repair
    113714368
   03430 Mismatch repair
    113714368
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:carb03032]
    113714368
   03400 DNA repair and recombination proteins [BR:carb03400]
    113714368
Enzymes [BR:carb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     113714368
    6.5.1.6  DNA ligase (ATP or NAD+)
     113714368
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     113714368
DNA replication proteins [BR:carb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    113714368
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     113714368
DNA repair and recombination proteins [BR:carb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     113714368
   NER (nucleotide excision repair)
    Other NER factors
     113714368
   MMR (mismatch excision repair)
    Other MMR factors
     113714368
SSDB
Motif
Pfam: DNA_ligase_A_N DNA_ligase_A_M HTH_36
Other DBs
NCBI-GeneID: 113714368
NCBI-ProteinID: XP_071921041
UniProt: A0ABM4VNC1
LinkDB
Position
1c
AA seq 441 aa
MASRPSAFDLLMSNASKKKSEQKQQKLSPKKRKTPTPIITSQNSAPISVKEPDSAQIKET
QLEKDMKNDDSSKIKDAQLGKSEEAVVKKPKVAITPDASLLELKDKAASFDPKKAAYWGK
GQRVPFMFVAKALDAISKESGRIAITAIVCNMLRTVMETTPEDLVAVVYLLANRIAPAHE
GLELGIGDASIIKALSEACGTKEAQIKKQYKELGDLGLVAKASRSSQSLMRKPEALTVVK
VFDTFRLIAKESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQAKLRIGLAEQTLLAAL
GHAAVYADKQSSTPANIDSSLEEAAKIVKQVYSVIPVYDKIIPALLADGVWDLPKTCSFS
PGVPVGPMLAKPTKGVSEILDKFQDIEFTCEYKYDGERAQIHYMEDGTVEIYSRNAERNT
GKYPDVVDAISRYFYCSPFQL
NT seq 1326 nt   +upstreamnt  +downstreamnt
atggcttctcgcccttctgccttcgacctcctcatgtccaatgctagcaagaaaaagtcc
gagcagaaacaacaaaaactatctcccaagaaacgcaaaacccccacccccatcatcact
tctcaaaattctgctccgatttcagtcaaagaacctgattcagctcaaattaaagaaacc
cagctggaaaaagatatgaaaaatgacgattcgagcaagattaaggatgcccagctgggg
aaaagtgaggaagcggtggttaagaaacctaaggtggcaattactcctgatgcgagcctt
cttgagttgaaggataaggcggcaagttttgatcccaagaaggcggcatattggggaaag
ggacaaagggtgccgtttatgtttgtagcgaaggcgttggatgctatttctaaagaatca
gggcggattgcgataactgcaattgtttgtaacatgttgaggactgtgatggaaacgacg
ccagaggatttggtggctgttgtttaccttttggcgaaccggattgctccagctcatgaa
ggattggagcttgggattggggatgcttcgattattaaggctctgtccgaggcgtgcgga
acaaaagaagcacaaattaagaagcagtacaaggagcttggtgatctaggccttgttgca
aaagcaagccgttcgtctcagtctttaatgcgcaaaccagaagcactaactgttgttaaa
gtttttgatacatttcgccttattgctaaggaatctggtaaggatagtcaagagaagaaa
aagaatcatatcaaggcactactggttgctgctactgattgtgaacctcagtacttgatt
cgtctgctccaggctaaactgcgcattggtttagctgagcaaactctgttagctgctttg
ggccatgctgcagtttatgctgataagcaatcttcaactcctgcaaatatagattcttct
ttagaagaggctgctaaaatcgtgaaacaagtttactcggtaattccagtctatgataaa
ataatccctgctcttcttgctgatggtgtatgggatcttcccaagacatgtagcttttca
cctggtgttcctgttggacctatgctagcaaaaccaactaagggagtttctgaaatattg
gataagtttcaggatattgaattcacctgtgaatacaagtatgatggagaacgtgctcag
attcactacatggaggatggtacagtggagatatatagtcgaaatgcagaaagaaacact
ggaaagtatcctgatgttgtggatgcaatttcaaggtacttttattgtagcccattccaa
ctttga

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