Coffea arabica (coffee): 113714469
Help
Entry
113714469 CDS
T11342
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X2
KO
K15172
transcription elongation factor SPT5
Organism
carb Coffea arabica (coffee)
Pathway
carb03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
113714469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113714469
03019 Messenger RNA biogenesis [BR:
carb03019
]
113714469
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
113714469
RNA polymerase I system
113714469
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
113714469
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
KOW4_SPT5
Spt5-NGN
KOW2_Spt5
KOW7_SPT5
KOW
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
KOW6_SPT5
Motif
Other DBs
NCBI-GeneID:
113714469
NCBI-ProteinID:
XP_027094116
UniProt:
A0A6P6UUS2
LinkDB
All DBs
Position
10c
Genome browser
AA seq
1033 aa
AA seq
DB search
MPRRREEEYDDEMEPEEDEDVEEEYEDEEEEYDGGKAGKKRRRSDFIDDLAEEDDEEEEE
DDDDEDYGGGGGKRKAKKRSGSHFFELEAQVDTDEEEEEEEGEDDFIVDTGAELPDEDDE
GRRMHRRPLLHREEDQEDFEALERTIHERYGRREVEYDDEATEVEQQALLPSVRDPKLWM
VKCAIGREREVAVCLMQKAIDKGPELQIRSVVALDHLKNYIYIEADKEAHVKEAIKGMRN
IFASAKIMLVPIKEMTDVLSVESKAVDISRDTWVRMKTGTYKGDLAKVVDVDNVRQKVTL
KLIPRIDLPALAAKLEGREVPKKKNKTFNPPPRFMNMDEARELHIRVERRRDPMTGDYFE
NIGGMMFKDGFLYKSFSMKSISTQNIQPTFDELEKFRQPSENGDGDVASLSTLFANRKKG
HFMKGDRVIVVKGDLKNLKGWVEKVEEDTVHIKPNEKGLPATLAIGDRELCKYFEPGNHV
KVVAGATEGATGMVVSVEGHVVNIVSDTTKELLRVFADNIVESSEVTTGVTRIGEYELHD
LVQLDDMSFGVIIRVESEAFQVLKGVPEKPEVALVRLREIKFKLDRKNNGTQDRNGNRLS
VKDVVKILEGPCKGKQGPVEHIYKGILFVYDRHHLEHAGFICAKAQSCVLVGGSRANVDR
NGGSLHSKFTKFGAPPRAPLSPMRSPRGGPPVNSAGRFRGGRGHDNLVGAIIKIRMGPHK
GCNGIVKEVKGNALRVELEAQMRIVTVNRDQITDNVNVSTPFREKSRFGMGSETPVHPSR
TPLRPYMTPMRDPGATPVHDGMRTPMRDRAWNPYTPMSPPRDDWEDGNPASWGSSPQYQP
GSPPSRTYEAPTPGYGDAGTPRDSNPAYANAPSPYLPSTPGGQPPMTPSSAYLPGTPGGQ
PMTPGSGGLDMMSPVVGGDNEGPWLLPDILVNVRRPGEDGDIGVVREVLPDGSCRVALGS
SGSGETITVLTNEVEVVAPRKSDKIKIMGGTHRGATGKLIGIDGTDGIVKLDITFDVKIL
DLDILAKLPHVKE
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgaagacgagaagaggagtacgacgacgagatggagccggaggaggatgaggat
gtggaagaggagtacgaggacgaagaggaagaatatgatggaggaaaggccgggaaaaaa
cggcggagatcggattttattgatgatttggcggaggaagatgatgaggaagaggaggaa
gacgatgatgatgaggattatggcggcggcggtggaaagagaaaggcaaagaagaggtcg
gggtcgcatttttttgaacttgaagctcaagttgatactgatgaggaagaagaggaggaa
gaaggcgaagatgactttatagtcgatactggagccgagctacctgatgaagatgatgag
ggtagaaggatgcatcgtcgcccactgcttcatcgggaggaggatcaagaggattttgag
gcccttgagaggactattcatgaaagatatggtaggcgagaggttgaatatgatgatgag
gcaacagaagttgaacaacaagctcttttaccatctgtcagggatcccaagttatggatg
gtgaaatgtgcgattggtcgtgaaagggaagttgcagtttgccttatgcaaaaggctatt
gataaagggcctgagttgcaaattagatccgttgtagctcttgatcaccttaagaactac
atttacattgaagcggacaaagaagcccatgtgaaggaggcaatcaagggtatgcggaat
atttttgcttcagcaaaaataatgcttgttccaatcaaggagatgactgatgttctttca
gttgaaagtaaagctgttgatatttccagggacacatgggtgagaatgaagacaggaaca
tataaaggagaccttgccaaggttgtagacgtggataatgtgcggcagaaagttactttg
aagttaatcccacggattgacttgccagccttggcagctaagctggaaggaagagaagtt
ccaaagaaaaagaacaaaacatttaatccgcctccacgttttatgaatatggacgaggcc
agagaattacacatacgagtggagcgtagaagggatccgatgactggagattattttgaa
aatattgggggcatgatgttcaaggatggcttcctatacaaatctttttccatgaaatca
attagcactcagaacatacaaccaacatttgatgagcttgagaaatttcggcaacctagt
gagaacggggatggtgatgtagctagtttgtccacactttttgcaaacaggaaaaaggga
catttcatgaaaggtgaccgagttattgttgtcaaaggcgatctgaagaatttgaaggga
tgggttgagaaagttgaggaagatacagtgcacataaaaccaaatgagaagggtctcccg
gcaactcttgctataggtgacagagagctttgcaagtacttcgagcctggaaatcatgtc
aaggttgtagctggagccacagaaggtgcaactggtatggtcgtttctgttgagggacat
gtagtaaatatagtatctgacaccactaaggagcttcttcgcgtatttgctgataacatt
gtcgagagctctgaagtaacaactggtgttactcgaattggagaatatgagctccatgac
cttgtgcagttggatgatatgagttttggtgtaattatacgtgtcgagagtgaagcattc
caggtccttaaaggggttccggagaagccagaggtagcacttgtgaggctaagagagatc
aaatttaagcttgacagaaaaaataatggaacacaagatcgaaatgggaaccgattatca
gtaaaagatgtagtgaaaattctcgagggcccctgtaaaggaaaacaaggccctgttgaa
catatttacaaagggattttgtttgtttacgaccggcatcaccttgagcatgctggcttt
atttgtgccaaagctcaatcctgtgtgctggttggtggatcacgagcaaatgttgacaga
aatggtggctccttgcattcaaaattcaccaaatttggagcacctcctcgtgctccccta
tctccaatgagatcacctagaggcggtccacctgtaaattctgcaggaagatttagaggt
ggaagagggcacgacaatttggttggtgctattattaaaattcgtatgggtcctcacaag
gggtgtaatgggattgttaaagaggttaaaggaaatgctctccgagttgagctcgaggcc
cagatgaggatagttacggttaatcgtgatcaaataactgataatgtgaatgtttcaaca
ccattccgggaaaaatctagatttggtatgggaagtgagaccccagtacatccttctcgt
actccgctacgtccatatatgactcctatgagagatcccggagctacaccagttcatgat
ggcatgaggacacctatgcgtgacagagcatggaatccatatacaccaatgagtccacct
agggacgattgggaggatggaaaccctgcttcatggggcagtagtccgcaatatcagcct
ggaagtcctccatcaagaacttatgaagctcctactcctggttacggtgatgctgggaca
ccaagggatagtaatccagcctatgcaaatgctccaagcccttacctaccatcaactcct
ggtgggcagccaccaatgacaccaagttctgcatatttgcctggtacccctggtgggcaa
ccaatgacaccgggcagtggcggtttagacatgatgtcgcctgtagtaggtggggacaat
gaagggccgtggcttttgcctgatatcctggtcaatgtgcgtaggcctggtgaagatggt
gatattggagttgtacgggaggtgcttccggatggttcatgtcgggttgcgctgggatca
agtggcagtggtgaaacaatcactgtccttacgaatgaggtagaggttgttgcaccaagg
aagtctgacaaaataaagatcatgggaggtactcatcgtggggctaccgggaagctcatt
ggtattgatggtactgatggcattgtcaagttggatattacctttgatgtgaagatctta
gacttggacattctggccaagcttccacatgttaaagagtag
DBGET
integrated database retrieval system
