Coffea arabica (coffee): 113714569
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Entry
113714569 CDS
T11342
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113714569
09123 Folding, sorting and degradation
03018 RNA degradation
113714569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113714569
03041 Spliceosome [BR:
carb03041
]
113714569
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113714569
mRNA cycle factors
Stress granule specific factors
113714569
Spliceosome [BR:
carb03041
]
Complex C
Other components
Complex C specific factors
113714569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_RdRP1_2
RRM_7
SET_assoc
RRM_MARF1
PABC_AtC3H46
HPS3_C
DUF5062
Motif
Other DBs
NCBI-GeneID:
113714569
NCBI-ProteinID:
XP_071925058
UniProt:
A0ABM4VZU2
LinkDB
All DBs
Position
10c:complement(5158922..5163722)
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AA seq
658 aa
AA seq
DB search
MAQIQVQNAGVTAGLNGVAAPAGGAAVAAAAAPIGGGNQFLSTSLYVGDLDVNVTDSQLY
DLFNQVGQVVSVRVCRDLSTRRSLCYGYVNYSNPQDATRAMDVLNFTPINGKSIRIMYSH
RDPSIRKSGTANIFIKNLDKAIDNKALHDTFSTFGNILSCKIATDGNGQSKGYGFVQFDH
AESAQTAIDKLNGMLINDKQVYVGQFLRKQERESAFSRTKFNNVYVKNLSESTTDDDLKK
IFGEHGAITSAVVMRDADGKSKCFGFVNFENADDAAKAVDALNGKKYDDKEWYVGKAQKK
SEREQELKSQFEQTAKEVVDKYQGLNLYVKNLDDSIDDDKLKELFSDFGTITSCKVMRDP
SGISRGSGFVAFTTPEEASRALSEMNGKMVISKPLYVALAQRKEERRARLQAQFAQMRPV
AIGPTIAPRMPLYPPGGPAIGQHLYYGQAPPTIIPPQAGFGYQQQLVPGMRPGGAPLPNF
FVPLVQQGQRPGGRRGAGPMQQAQQPVPLMQQQMLPRGRMFRYPPGRSVPDVRMPGVAGG
VLSPYDMGGTLPREGAIGQPMPATALASALANASPEQQRTMLGENLYPLVDQLEPEYAAK
VTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLQNVQQASGPADQLASLSLSDSIVS
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcaggtgcagaatgcgggagtgacagctgggctgaatggagtggcggct
ccggctggtggtgctgctgtggcggcagcagcggctcccattggtggagggaatcagttt
ttgtcaacctcgctttacgtgggtgacctggacgtcaacgtgacggactcccaattgtac
gatctgttcaaccaggtgggacaagtggtttcggtaagggtctgtagggacctcagcact
cgccgctcactctgctatggctacgtcaactatagcaatcctcaggatgctacaagggca
atggatgtgttaaacttcactcctatcaatggcaagtcgatcaggatcatgtactctcat
cgagaccctagcatccgtaagagtgggactgcaaatatctttatcaagaatctggacaag
gcaattgacaacaaagctttgcatgatacattctcaacctttggcaacattctttcatgc
aagatagctactgacggcaatggccaatctaagggttatggttttgttcaatttgaccat
gcagaatctgctcagactgccattgataagttgaatggaatgcttattaacgataagcaa
gtgtatgttggtcagttccttcgtaagcaggagagagagtccgccttcagtaggaccaaa
tttaacaatgtctatgtgaaaaatctatcagagtctaccacagatgatgatctaaagaaa
atttttggggagcatggagcaatcactagtgcagtggtgatgagggatgcagatggaaaa
tccaagtgttttgggtttgtcaactttgagaatgcagatgatgctgccaaagctgttgat
gctcttaatggaaaaaaatatgatgacaaggagtggtatgttggaaaagcccaaaagaag
tctgaaagagagcaagagctcaagagtcaatttgagcaaacggcaaaggaagtggtagac
aaatatcaaggtttgaatttatatgtaaagaacctggatgacagcattgatgatgataaa
cttaaggaactgttttcggattttggcaccataacctcatgcaaggttatgcgggatcct
agtggtattagcagaggatcaggttttgtagctttcacaactcctgaagaagcttctaga
gctctttctgagatgaatggaaagatggtgatcagcaagccactttatgttgcactggcg
cagaggaaagaagagcgaagagcaagattacaggctcagtttgcgcaaatgaggcctgtt
gcaatagggccaactattgctcctagaatgcctctctatcctcctggtggtcctgctatt
ggacaacatctatattatgggcaagctcctcctactataatccctccacaggctggattt
ggatatcagcagcagcttgtacctggaatgcgacctggtggagctcctttgccaaatttc
tttgtgccactggtccagcaaggccagcggcctggtggaaggcgtggagcagggccaatg
caacaagcccagcagccagtgccattgatgcagcagcagatgctaccaaggggacggatg
tttaggtatccacctggccgcagtgttcctgatgtgcgaatgcctggtgtagcaggaggc
gttctctctccatatgacatgggtgggacgcttccccgagaaggtgccattggtcagcca
atgccagctaccgctctggcatctgcacttgcaaatgcatccccagaacagcaacgcacg
atgttgggtgaaaatctgtatccattggttgatcagctggagcctgaatatgcagccaaa
gttacaggcatgcttctggagatggaccagacagaggtcttgcatctactggaatcacca
gatgctttaaaggcaaaagttgctgaggcaatggaggtcctgcagaatgttcagcaggca
agcggcccagctgatcagctagcctcactttccctgagtgacagcatcgtttcctga
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