Coffea arabica (coffee): 113714689
Help
Entry
113714689 CDS
T11342
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113714689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113714689
04121 Ubiquitin system [BR:
carb04121
]
113714689
03036 Chromosome and associated proteins [BR:
carb03036
]
113714689
03400 DNA repair and recombination proteins [BR:
carb03400
]
113714689
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
113714689
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
113714689
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
113714689
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
113714689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-HC5HC2H_2
zf-C3HC4_4
zf-RING_5
zf-RING_6
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
PTCB-BRCT
zf-RING_10
RTT107_BRCT_5
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
113714689
NCBI-ProteinID:
XP_027094489
UniProt:
A0A6P6UUU9
LinkDB
All DBs
Position
1e:complement(52409830..52415647)
Genome browser
AA seq
687 aa
AA seq
DB search
MAEMQKLVKLLNPWALHHQKLGLELKCPLCLNLLNKPLLLPCTHIFCDICVPRSNQFGTE
CPACKNQCPDGDIRSAPYMENLVSIYRSLDATFANISLQILSSEQALPHVAPRIVDKLKK
ELSETPEGGVINSAITNKAAMLSNAHNKDVLQSCGKKGSDEVLETEEIDMNQVPQLSPES
PPSFGDVKDMDGNTSLPGSRCGTTEKCKTKIIMDSCMLDTPGGGVVDQGTIQKGTPYTRD
AKRQKMLDYGSSATVVMGNCLTKKVDSSSNGAISNCNLAVKPEEQPCIAQPTPVSNSSDL
ESVCAFCHSSKLTDGTGPILYYANRKEVYGEKSALSNVTAVHSKCIEWTPRIYFEGETIK
NLESELGRAAKLKCSSCGQKGAALGCFAKSCCRTYHVPCAFAIQECRWDCEDFLMLCPSH
NSFKFPREKSKSQKSSTGLKHNTMSNETLFTNSEFWATLPSGRKEWVFCGSALSSEEKFI
LVKFATMCGATVSKLWESNVTHVIAATDKKGACTRTLKVLMGILNGKWILTMDWVKACTE
AKHPVNEEPYEVNLDNHGCLNGPKTGRLRVSNNEPKLFDGLKFYFSGDFVPAYKIDLLDL
VRTAGGTILESAEQLIVQCHEQTTFHECLVVYNSDATRACAIEEEISVISRRLEEAANAA
KETNSPVVRHTWILESIAACKLLPLPC
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaatgcagaaattagtgaagttgttgaacccttgggctctccaccatcagaaa
ctgggtcttgagctcaaatgccctctttgcctaaatttgctgaataaaccattgttgttg
ccctgtactcacattttctgcgatatttgcgtccctagatctaaccaatttggaacagag
tgccctgcttgcaaaaatcagtgtcctgatggagatataagatcagctccttacatggag
aacttggttagcatctaccgaagtttggatgctacttttgctaatatcagccttcagatt
ctatcttctgagcaagcactgccacatgttgctccacgaattgttgataaattaaaaaaa
gagctgagtgaaacacctgagggtggagtaatcaacagtgcaataaccaataaagctgct
atgttaagtaatgctcacaataaagatgtattgcagtcttgtggtaagaagggaagtgat
gaggtgcttgagactgaagaaatagatatgaatcaggtacctcaactttcaccggagagc
cctccttcatttggtgatgtgaaagatatggatggcaacactagcttgccaggcagcaga
tgtgggaccacggagaaatgtaagaccaaaataataatggacagctgtatgttagacaca
cctggaggaggtgtcgtggaccaagggactatccagaaagggactccttatacaagggat
gcaaagagacaaaagatgttggattatggttcatctgcaactgttgtgatgggtaattgc
ctcactaaaaaagttgactcttcctcaaatggtgcaatctccaactgcaatttggctgtg
aaacctgaagagcagccctgtattgctcagccaacaccagtctcaaattcatctgatctg
gaaagtgtttgtgccttctgtcattcctccaagctgactgatggaacgggtcccatattg
tactatgctaatcgaaaggaagtgtatggagaaaagtctgctctttccaatgttacagct
gttcatagcaaatgcatcgagtggacacctcgaatttattttgaaggggaaactataaaa
aatttggagtccgagttgggaagagctgctaagctcaaatgcagtagctgtgggcagaag
ggtgctgcacttggctgctttgccaagtcctgttgcagaacttatcatgtcccttgtgca
tttgcgattcaagagtgcagatgggattgtgaagatttcctaatgctgtgtccaagtcat
aactcttttaaattcccaagagagaaatcaaagtctcagaagtcttctactggattgaag
cacaacaccatgtccaatgaaacgctgtttacaaattcggagttttgggcaaccttacct
tctggacgaaaagagtgggttttctgtggatctgctctgtcttcggaggagaagtttatt
cttgtcaagtttgctactatgtgtggtgctactgtatccaagctttgggaatcgaatgtc
acacatgtaattgcagcaacagataaaaagggtgcttgcaccaggacattgaaagttctg
atgggaatattgaatggaaagtggatccttacaatggattgggtaaaagcttgcacagaa
gcaaaacatcctgttaatgaagaaccttatgaagttaacttagacaaccatggatgtctc
aatggcccaaaaactggcagactaagggtctcaaataatgagccaaaactttttgatggc
ttgaaattttatttcagcggggattttgtgccagcttacaaaatcgacctgttggatctg
gttaggactgcaggaggtaccatacttgagagtgcggaacagttaatagtacagtgccac
gaacaaacaactttccacgaatgtttagttgtttataatagtgatgccacacgagcatgt
gcaatcgaagaagaaatttcagtcatttcacggaggttagaagaagctgctaatgcggcg
aaagaaactaattcacctgttgttcgacatacatggattttggaatcaattgctgcatgc
aagttgctacctctgccttgttaa
DBGET
integrated database retrieval system
