Coffea arabica (coffee): 113714868
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Entry
113714868 CDS
T11342
Name
(RefSeq) protein CHROMATIN REMODELING 8-like
KO
K10841
DNA excision repair protein ERCC-6
Organism
carb Coffea arabica (coffee)
Pathway
carb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
113714868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
carb03036
]
113714868
03400 DNA repair and recombination proteins [BR:
carb03400
]
113714868
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
113714868
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
113714868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
ResIII
HDA2-3
WHD_SOWAH
Motif
Other DBs
NCBI-GeneID:
113714868
NCBI-ProteinID:
XP_027094820
UniProt:
A0ABM4X2Z1
LinkDB
All DBs
Position
1c:58057196..58063831
Genome browser
AA seq
1212 aa
AA seq
DB search
MEEEEEDRVLLNRLGVTSANPDDIERHIFGQAKTSAADSSAAGGSDGEELVVGAESNGAS
STSLPDLYNKLRAVELEIDAVKSAFEVKSFAKDDAHVSEGDSEKGHESVEAEENNSCASP
NDTTLQHALASDRLKSLIKTKAQLEKKISDGSPDLEYRNLIKNIVKEERNSKRKPKDVKK
LIKNQSKRLKRASFSEDDDFDAVLNAASAGFVETERDELVRRGIFTPFHKLRGFERRIQE
PGSSSRHDVTENADESDQVASSSLARAVRSITEAAQARPTTKLLDSEALPKLVAPTHPFQ
RLRVPLRIKHSLDNDVEKNKDTKRKKKRPLPAKIWRKKISREEKTFEGNDARNSGNEDDD
GEDAVDLDGEGPGFVALEGGLRIPEAIFSKLFDYQRVGVQWLWELHCQRAGGIIGDEMGL
GKTIQVIAFLGSLHFSFMYKPSIIICPVTLLRQWRREVQKWYPRFHVELLHDSAQDAPGM
KKQKSSSESDDEEFLGSDIEETLPSKTTKKWDSLINRVLRSDAGLLITTYEQLRLLGEKL
LDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIKMTGAPIQNKLSELWSLFDFVFPG
KLGVLPVFEAEFAVPISVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLT
KKTEHVLFCSLTAEQRSVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREHS
CKNPDYGNPVRSGKMKVVAQVLKVWKEQGHRVLLFTQTQQMLDILENFVVAVGYTYRRMD
GLTPIKQRMALIDEFNNSDDVFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARE
RAWRIGQTKDVTVYRLITRGTIEEKVYHRQIYKHFLTSKILNNPQQRRFFRSRDMKDLFT
LNDDEKDGSTETSNIFSQLSEAINVVGVHDDNQNKLSLTESAPSAASDKRNGSDTENKGK
EMDDHSDGEVDEERNILRSLFDAHGIHSAMNHDALMNAHDEEKMKLEEQASQVAQRAAEA
LRQSRMLRRQENIAVPTWTGKSGAAGAPSASGRRFGSAMNSHMISKTRSSDELVNREANR
PNGLVAGASSGKVLSSAELLAKIRGNQQRAVNQGLEHQFGLASSSNNFGRSADTRPRESK
NSATQPEVLIRQLYTFIQQNGGSSSTASIVDHFKDRIPSKDLPLFKNLLKEIATLEKNSG
GSSWVLKPEYQE
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaggaggaagatagggttttattgaatcgtttaggtgtcacttctgcaaat
cctgatgatatcgagcgccacatttttgggcaggctaaaactagtgctgcagacagtagt
gcagctggaggaagtgatggggaagaattggttgttggagcagaaagcaatggtgcatca
tcaactagtcttcctgatctatacaataaactcagagcagtggagctcgaaatagatgct
gttaaatctgcttttgaagttaaaagctttgcaaaagacgatgcgcatgtctctgaaggt
gatagtgagaaagggcatgagagtgtagaagccgaggaaaataattcttgtgcttctccc
aatgatacaactctccagcatgctcttgcttctgatcgtttaaagagtctgattaaaaca
aaggctcaacttgagaagaaaatttcagatggttccccagatcttgagtacaggaacttg
ataaagaatattgtcaaggaagagcgtaattccaaacgaaagccaaaggacgttaagaaa
ttgatcaagaatcagagcaaaaggctgaaaagagcttcttttagcgaggatgatgatttt
gatgcagttctaaatgcagcatctgcggggtttgtcgaaacagaaagagacgaattagtc
cgcagaggaattttcacccctttccacaagcttaggggttttgaacgccgtattcaagag
cctggttcatccagcaggcatgatgttaccgagaatgcagatgagagtgatcaggttgct
tcgtccagcctagccagggctgtccgttcaatcactgaggctgctcaggctcgtccaaca
acgaagttgcttgattcagaagcattaccaaaactggttgcacccactcatccttttcaa
aggttaagagtgccattgagaattaagcattctctagacaatgatgtggagaaaaataaa
gatacaaaaaggaagaagaaaagaccccttcctgccaaaatttggagaaaaaaaatatcc
cgtgaagagaaaacatttgagggaaatgatgctaggaactctggtaatgaagatgatgat
ggagaagatgctgtagatctggatggtgaaggacctggttttgttgcgttagaaggtggg
ctgaggattcctgaagcaatttttagcaaactttttgattatcaaagggttggcgtccag
tggttatgggaactccactgtcaaagagctggtgggataattggagatgagatgggcctt
ggtaaaaccatacaggtcatagctttcctggggtcattgcatttcagttttatgtataag
ccaagtattattatctgtcctgtcacactcttacggcaatggagaagagaagttcaaaag
tggtatccaaggtttcatgtggaattattgcatgattctgctcaggatgcacctggtatg
aagaaacagaaatcttctagcgagagtgatgatgaagagtttcttggtagcgatattgaa
gaaactttaccttctaaaactaccaaaaaatgggattctttgatcaaccgtgttcttagg
tcagatgctggcctgcttatcaccacttatgagcaacttaggctgctgggcgagaagtta
cttgatattgaatggggatatgcagttctggatgaaggacatcgcattcgaaatccgaat
gcagaaattacgcttgtttgcaaacagttgcagaccgtgcaccgtataaaaatgacaggt
gcaccaattcagaacaagctgagtgagttatggtctttgtttgactttgtcttcccagga
aaattgggcgtcttgcctgtatttgaagccgaatttgcagttcccatatctgttggtggt
tatgctaatgcaacccctttgcaagtttccacagcttacagatgtgctgttgttctgcgt
gacctgatcatgccctacctcctgcgtcgcatgaaggctgatgtaaatgcccagctaaca
aaaaagacggaacatgtcctgttttgcagccttactgcagagcagaggtctgtctaccgg
gcattcttagctagctctgaggtggaacagatcttggatggtagcagaaattctctttat
ggtattgatgtgatgcgaaaaatttgtaaccaccctgatctgcttgagagagagcattcc
tgcaaaaatccagattatggaaatcctgtgcgcagtggcaaaatgaaagttgttgcccaa
gtactcaaggtgtggaaggaacagggtcaccgtgttcttctttttactcaaacgcagcag
atgcttgatatacttgagaattttgtagtagctgttggctacacttatcggagaatggat
ggtctgactcctataaagcaaagaatggctttgattgatgaattcaataattcggatgat
gttttcatcttcatcttaacaaccaaagttggtggtctgggaacaaatttaacaggtgct
gatagggtgattatttttgacccagactggaacccgtcaactgatatgcaggcaagggag
cgagcttggcgtatcggccaaacaaaagatgtgactgtttacagattgattactcgtggt
accattgaagagaaggtttatcaccgtcaaatttataaacactttcttaccagcaaaatc
ttgaataatccacaacagagaagattcttcagatcacgagatatgaaggatcttttcaca
ttgaatgatgatgagaaggatggttctactgaaacatctaatatttttagtcagttatct
gaagctataaatgtggtaggggtgcatgatgataatcagaataagctatctctgacagag
tcggccccttctgctgcaagtgacaaacgtaatggctcagatactgaaaataaagggaaa
gagatggatgaccacagtgatggggaagttgatgaagaaagaaacatcttgcggagcctt
tttgatgctcatgggattcatagtgccatgaatcatgacgctctcatgaatgctcatgat
gaggagaagatgaagctggaggaacaagcctcccaagtggcacagagagccgcagaagca
ttgcggcagtcacgaatgcttcgacgccaagaaaatatagctgttcctacgtggacaggt
aaatctggagctgctggtgcaccatctgctagcggaagaagatttggctctgccatgaat
tctcatatgattagcaaaacaagatcatctgatgaattagttaacagagaggcaaacagg
ccaaatgggttagttgctggggcttcttcaggtaaagtattatcttcagctgaattattg
gccaaaattagaggaaaccaacagagagctgttaatcaagggcttgaacatcagtttggc
ctggcttcaagttccaataactttgggaggtctgcagacaccagacctagggaatcaaag
aattcagctacgcagccagaagtattaattcgtcaactctatacatttattcagcagaat
ggtggaagctcaagtactgccagcatcgtggaccatttcaaggacagaataccatcgaag
gatcttccattgtttaaaaatcttctgaaggaaatagctacgttggagaaaaactcgggt
ggttcgtcctgggttttaaagcccgagtatcaagaatga
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integrated database retrieval system
