Coffea arabica (coffee): 113715660
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Entry
113715660 CDS
T11342
Name
(RefSeq) nuclear poly(A) polymerase 1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113715660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113715660
Enzymes [BR:
carb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
113715660
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
113715660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
Nrap_D2
MTPAP-like_central
Motif
Other DBs
NCBI-GeneID:
113715660
NCBI-ProteinID:
XP_071926829
UniProt:
A0ABM4W536
LinkDB
All DBs
Position
11c:38986613..38994269
Genome browser
AA seq
715 aa
AA seq
DB search
MSMNRMGNRSQNPNRVYGVTEPISMAGPSESDMIRNRELEKFLADAGLFESPEEAIRREE
ALARLDQIVKDWVKHVSRSKGLNEQVVEEMTALIFTSGSYRLGVHSPGADIDTLCVGPMH
VTRNEDFFGELHRILVEMPDVQELNSVPDAYVPVMRFKLDGIPIDLLYASLPLPNIPEDL
DISQDSILHNVDEQTVRILNGCRVTDEILNLVPNIQNFRTALRCLRLWAKRRGIYSNVAG
FLGGVNWAILVARICQLYPNALPCTLVSRVFRVYNLWQWPNPVILCPIQEGSSNAWDPRR
NRKDREHLMPIITPAYPCMNSSYNVSNSTLRIMMEEFRRGNEICEAIEANKAVWVTLFEP
FAFFEAYKDYLQIDIKAQSGDDFRNWKGWVESRLRFLNSMIERYTGGILQCHPCPGDFSD
ECRPHCCSYFMGLRRKQGSSPEGGKQFDIRWIVDKFKHQVCQYSAWKATMWINVCHVRRK
NIPVFVFSGGIWPSQRAKVAAQDCLGKRLPGNNFLHADDAGSRKRRKQVVVNRGVHLEEF
SSLTSGTSTASLQIEAGEEEQSEAVIADTIRNKNYRKNMTNHDQEPEGSVKCRSPSCSNP
KGASPVEKWVTDSSSGEIVGLSDMKTEVSGGTVENNSFQLSMTEQGVQIPVVGAGGRNSC
SKPLQNEGLEELELLPPSSVASASTSKASQKPLISFNFTSSKKAVGPSAERHQMA
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgagtatgaataggatgggtaacaggtcgcaaaatcctaatcgagtttatggagtaaca
gagccaatttcgatggctggaccttctgaatctgacatgattagaaatcgggaattagag
aagtttctagcagatgcaggactttttgaaagtcctgaggaagctatcagaagggaggaa
gctctagctagattggaccagattgttaaggattgggtaaagcatgttagtcgctccaaa
ggcttaaatgagcaagttgttgaagaaatgactgcattgattttcacatccggttcttat
aggcttggggtacacagccccggagctgatatagacaccttatgcgtgggccctatgcat
gttactcgcaatgaggatttttttggggaattgcatagaattctggtggagatgcctgat
gtgcaagagttgaattcagtgcctgatgcttatgtccctgtcatgagattcaaacttgat
ggcattcccatagatctgctttacgcaagtctaccactcccaaatatacctgaagacctg
gatatctctcaagattccatactacataatgtggatgagcagactgttcgcattttaaat
gggtgcagggttactgatgaaattttgaatttggtaccaaatatacagaattttcgaact
gctctaagatgtctaagattgtgggcaaagcggcgtgggatatattcaaatgtggcaggc
tttcttggtggtgttaattgggcaatacttgttgctcgcatttgccagctatatcccaat
gccctgccttgcacgttagtctctcgggttttcagagtctataacctgtggcaatggcca
aatcctgttattttatgtccaattcaagaaggatcttcaaatgcctgggatccaagaaga
aatcggaaagacagggagcacctgatgccaattataactccagcatatccttgcatgaac
tctagctacaatgtgtcaaatagcacattgcgaatcatgatggaagagtttcggagggga
aatgagatttgtgaggcaatagaggcaaacaaagctgtctgggtaactctttttgagcct
ttcgcattttttgaagcatacaaagattacttgcagatagacataaaggcacagagtggt
gatgacttcagaaattggaagggttgggttgaatctcgattacgttttcttaattcaatg
attgagagatatacagggggcattctccaatgccatccttgccctggtgacttctcggat
gagtgtagacctcattgctgctcttattttatgggtttacgaagaaaacaaggtagcagt
cctgaaggtggtaaacaatttgacatacggtggattgttgataaatttaagcaccaagta
tgtcagtactctgcttggaaagccacaatgtggataaatgtatgtcatgtgaggcggaaa
aacattccagtttttgtcttctctgggggaatctggccttcccagcgagcaaaagttgct
gctcaagattgcttgggtaaaagattgcctggaaataattttcttcatgctgatgatgct
ggtagcagaaagagaagaaaacaagtagtagttaatcgtggagttcatttggaggagttt
tcatccctgactagtgggactagtactgcaagcttgcagattgaagcaggagaggaagaa
caatctgaagctgttattgctgacaccatcagaaacaaaaactaccgcaagaatatgacc
aaccatgatcaggaacctgaaggatctgtaaagtgcagatcaccctcatgctcaaatcca
aaaggtgcatcacctgtggaaaagtgggtcactgattcttcttctggggagattgttggt
ttgtcagatatgaagactgaagtttctggtggaactgtggaaaataattcatttcagttg
tccatgacggaacaaggagttcaaattccagtggtaggcgctgggggtcgcaattcttgc
tccaaacccctacagaatgagggcttggaagagcttgagttgcttccaccatctagcgtt
gcatccgcttcaacttccaaggcctctcagaagcctcttatcagcttcaatttcacttcc
tcgaagaaagcagttggacccagtgctgagaggcatcaaatggcttga
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