Coffea arabica (coffee): 113715712
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Entry
113715712 CDS
T11342
Name
(RefSeq) TATA-binding protein-associated factor BTAF1-like isoform X1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
carb Coffea arabica (coffee)
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113715712
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
113715712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TOR1L1_N
HEAT_ECM29
HEAT_GCN1_C
HEAT_GCN1
HEAT_EZ
ResIII
HEAT_MROH2B_C
HEAT_2
HEAT_GCN1_C_2
ARM_TBCD_2nd
TPR_TNPO3_IPO13_3rd
TAF6_C
mTOR_dom
Motif
Other DBs
NCBI-GeneID:
113715712
NCBI-ProteinID:
XP_027095803
UniProt:
A0A6P6UZ16
LinkDB
All DBs
Position
11c:4226879..4255412
Genome browser
AA seq
2052 aa
AA seq
DB search
MAQQQSSRLHRLLTLLDTGSTQATRFTAAKQIGEIAKSHPQDLIPLLSKVSQYLCSKRWD
TRVAAAHAIGAIAENVKHTSLTDINSCLEMKISKLGVSCPVGDVLAWAYCYPKFVANASF
RSFDLNKVLEFGALLASGGQEYDIGSESGKNPRERLARQKQNLRRRLGLDVCEQFMDVGD
MIRDEDLLVQKFHSIGNGLAPQYRSMSNFQQFVANMVPGVKSRRPSARELNLLKRKAKIS
SKDQSKAWSKDGNAEVQPQELDMASPKGPYRDIVSLNKQFADAVSDDDNFDSDGDGSWPF
QSFVEQLLVDMFDPVWEVRHGSVMALREILTHQGASAGVIMNDLNFDSALSSSFNDVGEE
NTTKRERQIDLNMQILFEESQPVLKRPKLEGASSLLTDTIVDSTKDDNLGIHVKVEAPGW
DLPMGHANGEVVSSDKVEVGHQSHLSSASDPNSYMSSAKICSEDKGSMEKADLFKDLPNN
PELLNVLKVARHSWVTNCEFLQHCTIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAV
LKYMHPSLVHETLNILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLSDLLGLVLPACTAG
LEDPDDDVRAVAADALLPTAAAIVFLKGQTLHSILMLLWDILLDLDDLSPSTSSVMNLLA
EIYTQEHMNPKSLGTVTSCEKQEFDLNKIGRLDDLGEEINYLENPYMLSTLAPRLWPFMR
HSITSVRHSAIRTLERLLEAGFKKSIAESSCSFWPSFILGDTLRIVFQNLLLESNEEILL
CTERVWKLLLQCPVEDLVGVVELYFSSWIELATTPYGSPLDATKMFWPVALPRKSHFRAA
AKMRAVRLENDSYKNTRLDVPDSAISQDKVGDPSFSSPAKIVVGADEDISVTHTRVVTAT
ALGILASKLHVTTLGFVIDPLWKALNSKSGVQRQVAAMVLISWFQELKMKDVSVSSEVGP
STLIGFRNWLLDLLACTNPAFPTKDTLLPYAELSRTYAKMRNEASQLHRITEASGMFHDL
LASTKLDLENLTADDAINFASKLPSPSSAEAYTERDAFDELESLKQRLLTTSGYLKCVQG
NLHITVSALLAGAVVWMSELPARLNPVILPLMASIKREQEEVLQSKAAEALAELISGCIP
RKPGPNDKLIKNLCGLACSDPCETPLAAVLSSIEIVEEQEFPSSGSTCSRQKSKVHILAP
GEDRSKAEGFISRRGSELALKFLCQKFGGSLFDKLPKLWDCLVEVLKPGNLDGLTPEEEK
FIDEAIDSVADSQVLINNIQVVRSLAPMLDWTLRPKLLTLLPCIFKCVRHSHVAVRLAAS
RCVMTMAKSMTSDVMGSVIEHVIPMLSDMSSVHARQGAGMLVSLLVQGLGVELVPYAPLL
VVPLLRCMSDIDHSVRQSVTHSFAALVPLLPLARGVPLPSGLSERLSRSKEDAQFLEQLV
DNSHIDDYKLSTELRVNLRRYQQEGINWLAFLKRFNLHGVLCDDMGLGKTLQASAIVASD
IAEHSHANKTEQLPPSVIICPSTLVAHWVYEIEKFIDTSLLTTLQYIGSAQDRISLRSEF
DNHNIIVTSYDVVRKDIDYLGQVFWNYCILDEGHIIKNSKSKVTAAVKQLKAQHRLILSG
TPIQNNVLDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSSKDAEAGALAMEALH
KQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPLQLRLYEQFSGSHVKQEISSIVKLNEL
DAGEGNPSTKTSSHVFQALQYLLKLCSHPLLVVGEKVPETVSTVLSDLFPGKADYISELH
NLQHSPKLIALQEILEECGIGIEASSSEGSIAVGQHRVLIFAQHKAFLDLIERDLFHVHM
KNVAYLRLDGSVEPEKRFEIVKAFNSDPTIDALLLTTHVGGLGLNLTSADTLVFMEHDWN
PMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINADNASLKTM
NTDQLLDLFTPAENGKGPRISRTSTENLDGETKLPGSSRGLKKILGGLEELWDQSQYTEE
YDLSQFLAKLNG
NT seq
6159 nt
NT seq
+upstream
nt +downstream
nt
atggctcagcaacaatcatcacgtcttcaccgtctgcttactttgttggacacgggctcg
acccaagcgacgaggtttactgcagctaagcaaattggggaaattgcaaaatcacatcca
caggacctgatccctctgttgagtaaggtttctcaatatctttgtagcaaaaggtgggat
actagggttgctgctgctcatgccattggagcaattgctgagaatgttaaacacacatct
ttgactgacataaattcatgccttgagatgaagatatcaaagttgggggtttcttgtcct
gttggcgatgtgctagcatgggcttactgttaccctaaatttgtagcaaatgcttcattt
agaagttttgatctgaacaaagtattggagtttggagctctattggcatctggggggcag
gagtatgatattgggagtgagagtggcaagaatccaagagagcgattggctcgacagaaa
caaaatcttcggcgtcgtcttggtttagatgtatgcgagcagttcatggatgttggtgac
atgataagagatgaagacctgctggtgcaaaagtttcactccattggcaatggtcttgcc
cctcaatataggtctatgtccaatttccagcaatttgtggcaaacatggtccctggtgtt
aaatctaggaggccaagtgcaagggaactgaatctcctaaaacgcaaagcaaaaataagt
tccaaagaccaatcaaaagcatggtctaaggatggaaatgctgaggtccaaccacaagag
ctggatatggcatcgccaaaaggcccttatcgtgacatcgtgagcttgaacaagcagttt
gcagatgctgtttctgatgatgataactttgatagtgatggtgatggcagttggcctttt
caaagttttgttgaacagctgctagttgatatgtttgatcctgtctgggaggtccgtcat
ggaagtgttatggctttgagagaaatattaacccatcagggtgccagtgctggagttatc
atgaatgacctgaactttgatagtgccctgagttctagtttcaatgatgtgggtgaagaa
aacacaactaagagggagagacagattgatctgaatatgcaaatcttgtttgaagagtcc
caacctgttttgaagagaccaaagcttgaaggtgcatcatctcttctgacagacacgatt
gttgattccaccaaagatgataatcttggtattcatgtaaaagttgaagcccctggatgg
gatttgcctatggggcatgcaaatggtgaagttgttagttctgataaggtggaggtgggg
catcaatctcaccttagtagtgcatcagatcctaatagttatatgtcaagtgcaaagatc
tgctctgaggataaggggtccatggaaaaagcagatctatttaaagatcttcctaacaat
cctgagctgctgaacgtgcttaaagtggctaggcattcttgggttacaaattgtgaattt
cttcaacattgtacaatccgattcttgtgtgtcttgtcactggaccgttttggagactat
gtgtctgatcaggtagttgctcctgttcgggaaacctgtgcacaggctctgggtgctgtc
ctcaagtatatgcacccatcgttagtccatgaaactttaaatatcttgcttcagatgcag
cgtagaccagagtgggaaattcgtcatggaagtcttttgggaataaaatatctggttgct
gtgcgccaggaaatgctaagcgatttgcttggtttggttctccctgcctgtacagctggg
cttgaggatcctgatgatgatgtaagagctgtggctgcagatgccttgctacctactgca
gctgctattgtttttctaaagggccaaactttgcattccatacttatgctactctgggat
atattgcttgatctggacgacttaagcccatctactagcagtgtcatgaatctcttggca
gagatatacactcaagagcatatgaatccaaagtcacttggaactgtcacatcctgtgaa
aaacaggaatttgatctcaataaaattggtcgcctagatgacttgggagaagaaataaat
tatcttgaaaatccttatatgttatcaacattagctccaaggttgtggccatttatgaga
cacagcatcacctcagtccgccattcagccattcgaactttggagcgtttgcttgaagct
ggttttaagaagagtattgctgagtcatcttgctcgttttggccttcttttattcttgga
gatacactaaggatagttttccagaacttgctgcttgaatcaaacgaggaaattttgctt
tgcactgagagagtttggaagctcctccttcagtgccctgtggaggacttggttggtgtt
gtagagttgtacttctcttcttggatagagctggcaactactccatatggttcaccactg
gatgccacgaaaatgttttggcctgtagcgcttcctcgtaagagtcatttcagagctgca
gctaagatgagagctgttaggcttgaaaatgactcttataagaacacgcgcttggatgtt
ccagacagtgctatttcacaggataaagttggagatccttctttctctagccctgctaag
atagttgttggtgctgatgaagacatttcggtcactcatacacgggttgttacagcaact
gcattgggcattttagcttctaagttgcatgtgacaaccttgggatttgtcattgatcca
ttgtggaaggcactgaactctaaatctggtgttcagcggcaggtggcagcgatggtgctc
atatcttggttccaggagttgaaaatgaaggatgtttctgtgtcttctgaagttggtcct
tcaactttgattggtttcaggaattggttgttagatttgttagcttgcaccaatccagca
ttcccgacaaaggatacacttcttccttatgctgaactttcaagaacatatgctaaaatg
cggaatgaggcttctcaactacaccgtatcactgaggcatctggcatgtttcatgatctg
ttggcttcaaccaagttggatctagaaaatttgactgcagatgatgcaattaattttgca
tcaaaactgccttctccatctagtgctgaagcatacactgaaagggatgcttttgacgaa
ctggaatcgttaaaacaaagacttttaacaacatcaggatatctgaaatgtgttcagggt
aatttgcacatcactgtctctgctttactagctggggcagttgtctggatgtcagagctt
cctgcaagactcaacccagttatattacctttgatggcttccattaaaagggagcaggag
gaagtgttgcaaagtaaggctgctgaagcccttgctgaacttatttctggttgcatccca
cgcaagcctggacccaatgacaagttaattaaaaatctttgtggtttggcctgttcggat
ccttgtgagacacctctagctgctgtccttagttccattgagatagttgaagagcaagaa
ttcccgtcttctggaagcacttgcagtagacagaaatcaaaagttcatatacttgcccct
ggtgaagaccgatcaaaggctgagggcttcatcagccgccgtggttcagaactagcactc
aaatttttgtgccagaagtttggtggttcattgtttgacaaactcccaaagctttgggat
tgccttgtggaagtccttaagcctggtaatcttgatgggttgactccagaagaagaaaag
tttattgatgaagctattgattcagttgcagattcgcaagtcttgataaataatattcag
gtggttcgatctcttgcaccaatgttggattggacattgagaccaaagctgctcacactt
cttccatgcatatttaaatgtgttcgtcattctcatgttgctgttaggctagctgcgtca
agatgtgtgatgactatggccaaatcaatgacctcagatgtcatgggttctgtaatagaa
catgtcattcctatgttgagtgacatgtcatctgttcatgctagacagggtgctggcatg
cttgttagcttgcttgttcagggacttggtgtggagttggttccttatgctcctttattg
gtggttccactactgaggtgtatgagtgacattgatcattctgtcagacagagtgtaaca
catagttttgctgcccttgtgcctcttcttccacttgcacgtggtgttcccctaccttct
ggccttagtgaacgtttatctagaagtaaagaagatgcacaatttttggagcaactggtt
gacaattctcacattgatgattacaagctctcaactgaactgagagttaatttaaggagg
tatcaacaagaaggcataaattggttggcttttttaaagcgctttaaccttcatggggtt
ttgtgtgatgatatgggccttggtaagaccctccaagcatcagcgattgtggcatctgat
attgcagagcattctcatgcaaacaaaactgagcagcttccaccatcagttataatatgt
ccttcaacactagttgcacactgggtctatgagatagagaagtttattgatacttctcta
ctgactacccttcagtatataggttcagctcaagatcgtatatctctccgttctgaattt
gacaaccataatatcattgtgacatcatatgatgttgtccgcaaagatattgattatctt
gggcaggttttttggaactactgtattctggatgagggacacatcataaagaattcaaag
tctaaagttacagctgctgtgaaacaattgaaggcccagcaccgcctcatactcagtgga
acacccatccagaacaacgttttggacctgtggtcactttttgactttctcatgccagga
tttcttggaacagaaagacaatttcaagctacttatgggaaaccgctgctagcagccagg
gatcctaaatgttcttcaaaggatgctgaggcaggtgcactagccatggaagcattgcat
aagcaggtcatgccttttctgctacgccgaacaaaagatgaagtcttgtctgatttgcct
gaaaaaataattcaggatagatactgtgacttgagtcctctgcagctaagactttatgaa
caattctctggttcacacgtaaaacaagaaatctcaagtattgtgaagctgaatgagtta
gatgctggagaaggaaatccttcaaccaaaacatcatcccatgttttccaggcacttcag
tacttgctaaaactttgcagccatccattgcttgttgttggggaaaaggttccagaaaca
gtctcaactgttttgtcggacctcttccctggtaaagctgattacatctctgaacttcat
aatctccaacactctcccaaacttatagccctacaagagattctggaagagtgtggaata
ggaattgaggcttcaagttctgaaggttccattgctgtagggcaacacagggttctgata
tttgcacagcataaagcttttctggatctaatagagagagatctgttccacgttcatatg
aaaaatgttgcatacttgcgacttgatggctctgttgaaccagagaaacgttttgagatt
gtaaaagccttcaactcagaccctactattgatgcgttgcttcttacaacacatgttggt
gggctgggattgaacctgacatcagctgacacccttgtatttatggaacatgactggaat
cccatgcgagatcatcaggcaatggatagggcacacaggctgggacaaaagaaagtagtc
aatgtccatcgtcttatcatgcgaggaacattggaagaaaaagtcatgagcctccaaagg
ttcaaagtctctgttgccaatgcagtcatcaatgcagataatgccagtctcaaaacaatg
aataccgatcagttgcttgacctatttactccagcggagaatggaaagggacctaggata
tcacggacttctactgagaatttggatggtgaaaccaaattaccaggtagcagcagggga
ctcaaaaaaatccttggcggactagaggagctttgggatcagtctcaatatactgaagaa
tatgacctaagccagtttttggcaaagttaaatggctga
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integrated database retrieval system
