Coffea arabica (coffee): 113716271
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Entry
113716271 CDS
T11342
Name
(RefSeq) protein CHROMATIN REMODELING 8-like
KO
K10841
DNA excision repair protein ERCC-6
Organism
carb Coffea arabica (coffee)
Pathway
carb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
113716271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
carb03036
]
113716271
03400 DNA repair and recombination proteins [BR:
carb03400
]
113716271
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
113716271
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
113716271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
HDA2-3
ResIII
WHD_SOWAH
Motif
Other DBs
NCBI-GeneID:
113716271
NCBI-ProteinID:
XP_027096363
UniProt:
A0A6P6V0K3
LinkDB
All DBs
Position
1e:52549262..52555816
Genome browser
AA seq
1212 aa
AA seq
DB search
MEEEEEDRVLLNRLGVTSANPEDIERHIFGQAKTSAADSSAAGGSDGEELVVGAESNGAS
STSLPDLYNKLRAMELEIDAVKSAFEVKNFAKDDAHVSEGDSEKGHESVEAEENNSRASP
NDTTLQHALASDRLKSLIKTKAQLEKKISDGSPDLEYRNLIKNIVKEERNSKRKPKDVKK
LIKNQSKRLKRASFSEDDDFDAVLNAASAGFVETERDELVRRGIFTPFHKLRGFERRIQE
PGSSSRHDVIENADENDQVASSSLARAVRSITEAAQARPTTKLLDSEALPKLDAPTHPFQ
RLRVPLRIKHSLDNDVEKNKDTKRKKKRPVPAKIWRKKISREEKTFEGNDARNSGNEDDD
GEDAVDLDGEGPSFVALEGGLRIPEAIFSKLFDYQRVGVQWLWELHCQRAGGIIGDEMGL
GKTIQVIAFLGSLHFSFMYKPSIIICPVTLLRQWRREVQKWYPRFHVELLHDSAQDAPGM
KKQKSSSESDDDEFLDSDIEETLPSKTTKKWDSLINRVLRSDSGLLITTYEQLRLLGEKL
LDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPG
KLGVLPVFEAEFAVPISVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLT
KKTEHVLFCSLTAEQRSVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREHS
CKNPDYGNPVRSGKMKVVAQVLKVWKEQGHRVLLFTQTQQMLDILENFVVGVGYTYRRMD
GLTPIKQRMALIDEFNNSDDVFIFILTTRVGGLGTNLTGADRVIIFDPDWNPSTDMQARE
RAWRIGQTKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILNNPQQRRFFRSRDMKDLFT
LNDDEKDGSTETSNIFSQLSEAINVVGVHDDNQNKPSLTESAPSAASDKRNGSDTENKGK
EMDDHSDGEVDEERNILRSLFDAHGIHSAMNHDALMNAHDEEKMKLEEQASQVAQRAAEA
LRQSRMLRRQENIAVPTWTGKSGAAGAPSASGRRFGSTMNSHMISKTRSSDELVNREANR
PNGLVAGASSGKVLSSAELLAKIRGNQQRAVNQGLEHQFGLASSSNNFGRSADTRPRESK
NSATQPEVLIRQLYTFIQQNGGSSSTASIVDHFKDRIPSKDLPLFKNLLKEIATLEKNSG
GSSWVLKPEYQE
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaggaggaagatagggttttattgaatcgtttaggtgtcacttctgcaaat
cctgaagatatcgagcgccacatttttgggcaggctaaaactagtgctgcagacagtagt
gcagctggaggaagtgatggtgaagaattggttgttggagcagaaagcaatggtgcatca
tcaactagtcttcctgatctctacaataaactcagagcaatggagctcgaaatagatgct
gttaaatctgcttttgaagttaaaaactttgcaaaagacgatgcgcatgtctctgaaggt
gatagtgagaaagggcatgagagtgtagaagccgaagaaaataattctcgtgcttctccc
aatgatacaactctccagcatgctcttgcttctgatcgtttaaagagtctgattaaaaca
aaggctcaacttgagaagaaaatttcagatggttccccagatcttgagtacaggaacttg
ataaagaatattgtcaaggaagagcgtaattccaaacgaaagccaaaggacgttaagaaa
ttgatcaagaatcagagcaaaaggctgaaaagagcttcttttagcgaggatgatgatttt
gatgcagttctaaatgcagcatctgcggggtttgttgaaacagaaagagatgaattagtc
cgcagaggaattttcacccctttccacaagcttaggggttttgaacgccgtattcaagag
cctggttcatccagcaggcatgatgttatcgagaatgcagatgagaatgatcaggttgct
tcgtccagcctagccagggctgtccgttcaatcactgaggctgctcaggctcgtccaaca
acgaagttgcttgattcagaagcattaccaaaactggatgcacccactcatccttttcaa
aggttaagagtgccattgagaattaagcattctctagacaatgatgtggagaaaaataaa
gatacaaaaaggaagaagaaaaggccagttcctgccaaaatttggagaaaaaaaatatcc
cgtgaagagaaaacatttgagggaaatgatgctaggaactctggtaatgaagatgatgat
ggagaagatgctgtagatctggatggtgaaggacctagttttgttgcgttagaaggtggg
ctgaggattcctgaagcaatttttagcaaactttttgattatcaaagggttggcgtccag
tggttatgggaactccactgtcaaagagctggtgggataattggagatgagatgggcctt
ggtaaaaccatacaggtcatagctttcctggggtcattgcatttcagctttatgtataag
ccaagtattattatctgtcctgtcacactcttacggcaatggagaagagaagttcaaaag
tggtatccaaggtttcatgtggaattattgcatgattctgctcaggatgcacctggtatg
aagaaacagaaatcttctagcgagagtgatgatgatgagtttcttgatagcgatattgaa
gaaactttaccttctaaaactaccaaaaaatgggattctttgatcaaccgtgttcttagg
tcagattctggcctgctgatcaccacttatgagcaacttaggttgctgggcgagaagtta
cttgatattgaatggggatatgcagttctggatgaaggacatcgcattcgaaatccgaat
gcagaaattacgcttgtttgcaaacagttgcagaccgtgcaccgtataataatgacaggt
gcaccaattcagaacaagctgagtgagttatggtctttgtttgactttgtcttcccagga
aaattgggcgtcttgcctgtatttgaagccgaatttgcagttcccatatctgttggtggt
tatgctaatgcgacccctttgcaagtttccacagcttacagatgtgccgttgtcctgcgt
gacctgatcatgccctacctcctgcgtcgcatgaaggctgatgtaaatgcccagctaaca
aaaaagacggaacatgtcctgttttgcagccttactgcagagcagaggtctgtctaccgg
gcattcttagctagctctgaggtggaacagatcttggatggtagcagaaattctctttat
ggtattgatgtgatgcgaaaaatttgtaaccatcctgatctgcttgagagagagcattcc
tgcaaaaatccagattatggaaatcctgtgcgcagtggcaaaatgaaagttgttgcccaa
gtgctcaaggtgtggaaggaacagggtcaccgtgttcttctttttactcaaacgcagcag
atgcttgatatacttgagaattttgtagtaggtgttggctacacttatcggagaatggat
ggtctgactcctataaagcaaagaatggctttgatagatgaattcaataattcggatgat
gttttcatcttcatcttaacaaccagagttggtggtctgggaacaaatttaacgggtgct
gatagagtgattatttttgacccagactggaacccgtcaactgatatgcaggcaagggag
cgagcttggcgtattggccaaacaaaagacgtgactgtttacagattgattactcgtggt
accattgaagagaaggtttatcaccgtcaaatttataaacactttcttaccaacaaaatc
ttgaataatccacaacagagaagattcttcagatcacgagatatgaaggatcttttcaca
ttgaatgatgatgagaaggatggttctactgaaacatccaatatttttagtcagttatct
gaagctataaatgtggtaggggtgcatgatgataatcagaataagccatctctgacagag
tcggccccttctgctgcaagtgacaaacgtaatggctcagatactgaaaataaagggaaa
gagatggatgaccacagtgatggggaagttgatgaagaaagaaacatcttgcggagcctt
tttgatgctcatgggattcatagtgccatgaatcatgacgctctcatgaatgctcatgat
gaggagaagatgaagctggaggaacaagcctcccaagtggcacagagagccgcagaagca
ttgcggcagtcacgaatgcttcgacgccaagaaaatatagctgttcctacctggacaggt
aaatctggagctgctggtgcaccatctgctagcggaagaagatttggctctaccatgaat
tctcatatgattagcaaaacaagatcatctgatgaattagttaacagagaggcaaacagg
ccaaatgggttagttgctggggcttcttcaggtaaagtattatcttcagctgaattattg
gccaaaattagaggaaaccaacagagagctgttaatcaagggcttgaacatcagtttggc
ctggcttcaagttccaataactttgggaggtctgcagacaccagacctagggaatcaaag
aattcggctacgcagccagaagtattaattcgtcaactctatacatttattcagcagaat
ggtggaagctcaagtactgccagcatcgtggaccatttcaaggacagaataccatcgaag
gatcttccattgtttaaaaatcttctgaaggaaatagctacgttggagaaaaactcgggt
ggttcgtcctgggttttaaagcctgagtatcaagaatga
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