Coffea arabica (coffee): 113716805
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Entry
113716805 CDS
T11342
Name
(RefSeq) ubiquitin receptor RAD23c
KO
K10839
UV excision repair protein RAD23
Organism
carb Coffea arabica (coffee)
Pathway
carb03420
Nucleotide excision repair
carb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
113716805
09124 Replication and repair
03420 Nucleotide excision repair
113716805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
carb03051
]
113716805
03400 DNA repair and recombination proteins [BR:
carb03400
]
113716805
Proteasome [BR:
carb03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
113716805
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
113716805
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
Rad60-SLD
UBA_7
UBA_RAD5A
CUE
Rad60-SLD_2
Dsc3_N
TECR_N
Ubiquitin_4
NQRA_N
UBA_3
Motif
Other DBs
NCBI-GeneID:
113716805
NCBI-ProteinID:
XP_027097067
UniProt:
A0A6P6V586
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Position
11c:39875265..39880492
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AA seq
390 aa
AA seq
DB search
MKVFVKTLKGTHFEIEVKPEDTVTDVKKSIETAQGAEVYPASQQMLIHQGKVLKDGTTLE
ENKVVENSFIVIMLSKSKSSPGEGSTASTAATAKVPQSSAPPVAAEAASNPQPAVAQTAS
SPQPPAVTPAPSTTQPPAAVSDADVYGQAASTLVAGNNLEGAIQQILDMGGGTWDRDTVV
RALRAAYNNPERAVEYLYSGIPESAEAPPVSRTPPSGQTTSPPAQLPPSTQPAAVPSSGP
NANPLDLFPQGLPNLGSNPAGANTLEFLRNSQQFQALRAMVQANPQILQPMLQELGKQNP
HLMRLIQEHQADFLRLINEPIEGGEGNILGQLAGAMPQTIQVTAEEREAIRRLEEMGFDR
ATVLEVFFACNKNEELAANYLLDHMHEFEE
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttttcgtgaagactctcaagggcacgcacttcgaaattgaagttaaacctgaa
gacacggttactgatgtgaagaaaagcatagaaactgctcagggggcagaagtttatcct
gcttcccagcaaatgcttatccatcaggggaaagttctcaaggatggaaccacattggaa
gaaaacaaagttgttgaaaatagttttattgtcatcatgttatctaagagtaagagctca
ccgggtgaaggttcgacagcttcaactgcagccacagccaaggtaccacaatcaagtgcc
ccacctgttgcagctgaggctgcatcaaaccctcaacctgctgtagctcagacagcatca
agtcctcaacctccagctgtaactccagcaccgtcaacaactcaacctcctgctgcagta
tctgatgctgatgtctatgggcaagctgcatctactttagttgctggtaacaaccttgag
ggagctattcagcagattcttgatatgggtggaggaacatgggatagggataccgttgtt
cgagcccttcgcgctgcttataacaacccagagagagctgttgagtatctatattctggc
atcccggaatcggctgaggctccacctgtgagtagaactccaccgagtgggcagaccact
agtccaccagctcagcttcccccatccacgcaacctgctgctgttccatcaagtggacca
aatgctaatccattagatctctttccccagggtcttccaaacttgggttcaaaccctgct
ggtgcaaacactttagaatttctgcgcaacagtcagcagttccaagcattgcgagcaatg
gtgcaggcaaaccctcaaattttgcagccaatgctccaagagctagggaagcaaaatcct
catttgatgcgacttattcaggagcatcaggcggatttccttcgtctgattaatgaacct
attgaaggaggagaagggaacatacttggtcagcttgctggagcaatgccacaaactata
caagtgacagctgaagagcgcgaagctatcagacgtctggaagaaatggggtttgatcgc
gcaactgtgctggaagtgttctttgcttgcaacaagaatgaggagctggctgctaactat
ctcttagatcatatgcatgagtttgaggagtga
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