Coffea arabica (coffee): 113717425
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Entry
113717425 CDS
T11342
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
carb Coffea arabica (coffee)
Pathway
carb04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
113717425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
carb04121
]
113717425
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
113717425
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Ortholog
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GFIT
Motif
Pfam:
Transp_inhibit
LRR_SKP2
F-box_5
LRR_At5g56370
LRR_4
LRR_FBXL15
F-box-like
F-box
LRR_At1g61320_AtMIF1
LRR_8
LRR_NXF1-5
F-box_COS111
Motif
Other DBs
NCBI-GeneID:
113717425
NCBI-ProteinID:
XP_027098065
UniProt:
A0A6P6V5T0
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Position
1e
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AA seq
586 aa
AA seq
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MAHSLSTPSFPEEVLEHVFSFLSSDKDRNAVSVVCKSWYEIERCCRRRIFIGNCYAVSPR
TVIQRFQDVRSVELKGKPHFADFNLVPEGWGGYVHPWIAAMAAAYPWLEEIRLKRMVVTD
ESLELISKSFKNFKVLVLSTCEGFSTDGLAAIAANCRNLRELDLRESEVEDLSGHWLSHF
PETCTSLVSLNIACLGSEVSFSALERLVARSPNLRTLRLNRAVPLEKLPILLHRATHLVE
LGTGAYSAESRPDVFSNLAEAFSACKQLKGLSGFWDLVPAYLPAVYSVCSKLTSLNLSYA
TIQSPDLVKLICQCHSLQRLWVLDYIEDAGLEILARSCKDLQELRVFPSDPYGAEENVPL
TERGLVAVSEGCPKLHSVLYFCRRMSNAALVAIARSCPNFICFRLCIIEPRTPDYLTLEP
FDTGFGAIVERCKELRRLSLSGLLTDRVFGYIGQHGKKLEMLSVAFAGDSDLGLHHVLSG
CESLRKLEIRDCPFGDKPLLANAAKLETMRSLWMSSCSVSFGACKLLAQKLPRLNVEVMD
ERGPPDLRPESCPVEKLYIYRTVAGPRFDMPDFVWKMDEGAGLRYS
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggctcactcgctgtcgacgccgtcgtttccggaggaggtgctggagcacgtgttctca
ttcctgagctcggacaaggacaggaatgcggtttcagtggtgtgcaagtcgtggtacgaa
atcgagaggtgttgcaggaggaggatattcataggcaactgctacgcggtgagccctcgg
acggtgatccaacggttccaggatgtgagatcggtggagctgaagggcaagccccatttc
gccgacttcaatttggtacccgaggggtggggaggctatgtgcacccttggattgctgcc
atggccgcggcttacccttggctggaagaaatcaggctcaagcggatggtggtcaccgat
gagtccctggagctgatctctaagagctttaagaacttcaaggtcttggttttgtcgact
tgtgagggctttagcactgatggacttgccgccattgctgccaattgcaggaatctgaga
gaactggacttgcgggagagtgaagtggaggacctaagtggacactggcttagccacttc
cctgaaacctgcacatcattagtgtcactgaatattgcttgcttaggatcagaggtcagt
ttttcagccttggaacgtctggttgctaggagtcctaatctgagaactcttcgtctcaac
cgtgctgtgccacttgagaagctccccattctattgcaccgtgccacccatttagttgag
ttaggtactggtgcctactcagctgagagcaggcctgatgtcttctcaaacctagcagaa
gctttttcagcgtgcaagcaactcaaaggcttgtctgggttttgggaccttgttcctgct
tatcttccggcagtgtactcagtttgctctaagctcacttctttgaacttgagttatgcc
actatacaaagccctgatctcgtcaagcttatttgccagtgtcatagtttacagcggctg
tgggtattagattacattgaagatgctggtcttgagatccttgccagatcttgtaaagac
ttgcaggaactgagggtgtttccttctgacccttatggtgcagaagaaaatgtgccattg
actgaacgaggccttgtcgctgtatcagagggctgccccaagctccattcggttctctac
ttctgtagacggatgtctaatgctgctttagtcgccattgctagaagctgccctaacttt
atatgcttccgactatgtataattgaaccccgtactcctgattacttaacccttgaacca
tttgatactggctttggagccattgtagagcgttgcaaggaacttcgccgactctccctc
tctggcctcctcactgatcgagtattcgggtacattggacaacacggcaagaaattagaa
atgctctctgtagcttttgctggggatagtgatttgggcctgcatcatgtgctatctggg
tgtgaaagcctccggaagcttgagatcagggactgcccgtttggggacaagcctctgcta
gccaatgctgcaaaactggagacaatgcgatccctttggatgtcatcttgctcggtaagt
tttggagcatgtaagctgctagcccagaagctgcctaggcttaatgttgaagttatggac
gagaggggacccccagatttgaggccagaaagctgccccgttgagaaactctacatatac
cgcacagttgcagggcctaggtttgacatgcctgattttgtctggaaaatggatgaaggt
gccggattgaggtattcttga
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