Coffea arabica (coffee): 113717664
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Entry
113717664 CDS
T11342
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113717664
09122 Translation
03013 Nucleocytoplasmic transport
113717664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113717664
03041 Spliceosome [BR:
carb03041
]
113717664
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
113717664
Spliceosome [BR:
carb03041
]
Complex C
Other components
EJC/TREX
113717664
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113717664
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
LIM_bind
Motif
Other DBs
NCBI-GeneID:
113717664
NCBI-ProteinID:
XP_027098240
UniProt:
A0A6P6V6A9
LinkDB
All DBs
Position
11e:51774692..51801116
Genome browser
AA seq
1889 aa
AA seq
DB search
MSLPPVDCLYITEESVKELKNGNSSFKFPNSVPVLRFLYELCWTLVRGELPFQKCKAALE
AVEFTDCVSEEEMGSNFADVVTQMAQDLTMPGEYRLRLIKLAKWLVESALIPLRFFQERC
EEEFLWESEMIKIKATDLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLATLLCQIPETS
TENGSAALVGNIKSLIGHFDLDPNRVFDIVLESFELQPDNNVFLELIPIFPKSHASQILG
FKFQYYQRLEVNCPVPTGLYHLTALLVKKDFIDIDSIYSHLLPDDEEAFDSYNTFSARRL
DEANKIGKINLAATGKDLMDEDKQGDVTVDLFAALDIEREAVAERSSELENSQTLGLLMG
FLAVDDWYHARMLFERLARLNPVEHVQICDGLFRLIEKSISAAYEVVCKMRLVSYSTSAG
AGIDLMQATSTSVSRSFIDLPKELFEMLVSAGPYLYRDTLLLQKVCRVLRGYYLCALELC
SNNDAPFNSHTAVISGNRTPRLHLKDARLRIEEALGICLLPSLQLIPANPAVGQEIWELL
SLLPYEARYRLYGEWEKDDEKLPMILAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAH
ANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQAGREKLKDDGL
NLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGNGIELVLLQELIQQMANVQYT
ENMTEEQLDAMAGSETLRYQATSFGVTRNNKALVKSTNRLRDALLPREEPKLAVPLLLLI
AQHRAVVVIDAAVPHIKMVSEQFDRCHGTLLQYVEFLSGAVTPTSAYALLVPTLNELVHL
YHLDPEVAFLIYRPVMRLFRCHNHLESSWPLDCNDAVTGTSADKESGTADASSSLLLNLD
SSRKPISWSDLLDTIRTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRNRYQSEIAKQHAA
LKALEELSDNSSSAITKRKKDKERIQESLDRLTMELQKHEEHVACVRRRLTREKDTWLSS
CPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVNTLHSLGTPFFNTVNHIDVLICKTLQ
PMICCCTEYEVGRLGKFLYETLKTAYFWKSDESIYERECGNMPGFAVYYRYPNSQRVTYS
QFIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKI
KGDEREDLKVLATGVAAALAARKSSWVTDEEFGMGYLDLKPAAVATSKSLGINSVGVQNG
AGQHVSVGEPAVGRSVTAGNVHSDYSNSIKDLRTRPADGRITESAALKSDSGSARAKGGS
LVNGSEHHSSVPSAAVHSGTSRSTEILKQLDESNNRSSEDITKMAVKMSTEPEGRAPVKR
SANAGSLSKQLKQDHGKDDTKSVKPVGRTSNTNGDRDPSSHISEGKQSGTAGVSSAISSN
NNMVCASSKGIPSTRSAEHASESKMEIANARSADSKVSAVRDDAEASDIVKSSRSLIHSP
RRDGAAPSSKSGDKPQKRASPAEDVDRLNKRRKGETDFRDLDGGDVRVSEKERSIDARAG
DRPHPVDVEKPGTDEQMTNRSIDKSVDRSKDKISERHDRDNRDRLERVDKPRGDDNLSEK
RDRSTERYGRERSVERAQERGGADRNSDRLSKDERNKDDRSKVRYAETSVDKSYNEDRFH
GQNLPPPPPLPPNMVPQSVNANRRDEDADRRFGTARHAQRLSPRHEERERRRSEENVVPL
QDDPKRRREDEFRDRKREERDGVLIKVEERDREREREKVSLLKEDIDSNAKRRKLKRDHL
PSEPGEYLPAAPAPPLTINLSQPYDGRDRAGDRKGAMVQRPAYLEEPSLRMHGKEAGSKT
ARRDTDPMYDREWDDDKRQRVEPKRRHRK
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcccgcctgtggattgcttgtacataacagaagaatccgttaaagaattgaag
aatgggaattccagtttcaaatttcccaattctgtccctgttctccgcttcctctacgag
ctctgttggaccctggttcgaggggagttgccgtttcagaagtgtaaagcggcgttggaa
gcggtggagttcactgactgtgtttcggaggaagaaatggggtcaaatttcgcggatgtt
gtcacccaaatggctcaagatctaacaatgccgggagagtaccgcttgcggcttatcaag
ctggcaaaatggctggtggaatctgcattgataccattaagatttttccaagagcgttgt
gaggaagaatttttgtgggagtctgaaatgatcaagataaaggctacagatctgaaatca
aaagaggtcagagtaaacactcgacttctttaccagcaaacaaaatttaatcttctcaga
gaagagagcgagggatatgcgaagctggctactcttctttgtcaaattccagaaacttca
actgaaaatgggtcagcagctctagtgggtaacattaagtcgctgattggacactttgat
ctggatccaaaccgtgtgtttgacattgtcttagaatcctttgaacttcagcctgataac
aatgtgttcttggagcttattccaatttttcccaagtctcatgcctctcaaatcctgggt
ttcaagttccaatattaccagcgtttagaagtcaattgtccagtaccaactgggctttat
cacctgacagctttgttggttaagaaagacttcattgatattgatagcatatattctcat
ttactacccgatgatgaggaggcatttgacagttataatactttttctgctaggagactc
gatgaggctaataaaattggaaagataaatcttgctgctactggaaaggatcttatggat
gaagataaacaaggtgatgtgacagtcgatctgtttgctgctttagacattgaaagagag
gcagttgctgagcgatcctcagagcttgaaaacagtcagactctgggcttgctaatggga
tttctggcagttgatgactggtatcatgctcgtatgttgtttgaacgtctcgcgagactt
aacccagtggagcatgttcagatctgtgatggtctgttcaggctcattgagaaatcaata
tctgcagcatatgaggtggtctgcaaaatgcgacttgttagttatagtacctctgctggt
gctggtattgacttgatgcaggctacaagtacgtcagtcagtagatctttcattgacctt
cctaaggagctctttgagatgcttgtgtctgctggaccttatttgtatcgggatacttta
ttgctgcagaaggtctgcagagtgctgagaggctattatctttgtgcacttgaactttgc
agtaataatgatgcacctttcaattctcatactgctgttattagtggtaaccggactcct
cgtctccacctaaaggatgctaggttgaggattgaggaagcacttggaatatgcctactt
ccttccctacagttgatacctgcaaatcctgcggtcggccaggagatttgggaactgttg
agtctccttccttatgaggcacgatatcgattatatggtgaatgggaaaaagacgacgag
aaacttccgatgattttggctgcgaggcaaacagcaaagttggacacaaggaggatctta
aaacgccttgcaaaagaaaatctgaaacaacttggaagaatggttgcaaaattagctcat
gctaatccaatgacagtgcttcggacaattgttcatcagatagaggcctatagagatatg
attactcctgttgtggatgcatttaaatacctgactcagcttgagtatgacattctggaa
tatgttgttattgaacgtttggcgcaagctggccgtgagaagctaaaggacgatggcctt
aatttatcagattggcttcaatcattggcatcattttggggtcacttgtgtaaaaagtac
ccatcaatggaactccggggtcttttccagtatctagttaatcagttgaagaaggggaac
gggattgagcttgttctccttcaggaacttatacagcagatggcaaatgttcaatacact
gagaatatgactgaggaacaattagatgccatggctggaagtgagactcttcggtatcag
gctacttcattcggagtaacacggaataacaaggccttagtcaagtcaactaataggttg
agagatgctttgcttcccagggaagagccaaagttggcagttccgcttttgctacttatt
gcacaacatcgtgcagtggttgtcatagatgctgctgtacctcatattaaaatggttagt
gagcagtttgataggtgccacggaacccttctacagtatgtggaatttctctctggtgca
gtgactccaacatcagcttatgctcttctggttcccactcttaatgagcttgtgcacctc
taccatcttgatcctgaggtggcctttttaatttataggcctgtaatgagattgttccgg
tgccacaaccacttggaatcttcctggccattagattgcaatgatgcagtcactggtacc
tctgctgacaaggagtctggaactgcagatgcttcctcctctttacttctgaatcttgat
tcttcccgcaaacctatttcgtggtctgatcttcttgatacaatcagaacaatgttgcct
tctaaagcctggaatagcttgtccccagacctctatgcgacattttggggtcttacactt
tatgatctttatgttcctagaaatcgttaccagtctgaaattgctaagcagcatgctgct
cttaaagctctggaagaactttctgataattccagttctgcaatcaccaaacggaagaaa
gacaaagagagaatccaggagtctttagatcggttgacaatggaactccagaagcatgaa
gaacatgttgcatgtgttcgtaggcgcctaactcgtgaaaaagatacatggttgagttcc
tgtccggacactttaaagataaacatggagtttcttcagcgctgtatattccctcgttgt
acatttagcatgcctgatgctgtatactgtgccatgtttgtaaatactctgcactccctg
ggcacaccatttttcaataccgttaatcacatagatgttctcatatgtaaaacactgcaa
ccaatgatttgttgctgtactgagtatgaagtgggtcgactagggaagtttttgtacgag
acattaaagactgcttacttttggaagagtgatgaatcgatatatgaacgcgagtgtgga
aacatgcctggatttgctgtttattacagatatccgaacagccagcgtgttacttatagc
caatttatcaaggtacattggaagtggagtcagaggatcacaaggctactcatccagtgc
ttggaatcaacggagtacatggaaattcgaaatgctcttatcatgctgaccaaaatttca
agtgtttttcctgtgactcgaaagagtggtatcaatcttgaaaagcgggtagctaaaatt
aaaggtgatgaaagggaggatctcaaggtattggctacaggtgttgctgctgctttggct
gctagaaagtcttcgtgggttacagatgaagaatttggcatgggttaccttgacctgaag
cctgcagcagttgctacttcaaagtctttaggtataaattcagttggtgtacaaaatggt
gcaggccaacatgtttctgtgggtgaacctgctgtagggagaagtgttactgcagggaat
gtacattcagattatagtaattccatcaaagatctaagaacaagacctgctgatggaagg
ataacagagagtgctgcactaaaatctgattcaggatctgcaagagccaaaggtggttca
ttagtgaatggctctgaacatcactcctctgtgccatctgctgctgtacacagtgggaca
tccaggtcaactgaaatcctaaaacaactagatgaatcaaataataggtcttccgaggat
atcacaaaaatggctgtgaagatgtctactgaacccgagggaagagctccagttaaacga
tctgctaatgctgggtccctctcaaaacaactaaagcaggatcatgggaaggacgatact
aaatctgtaaaacctgttggcagaacttcaaacactaatggcgacagagatccatcttct
cacatctctgaaggcaaacaaagtgggactgctggtgtttcttctgcaatttctagcaat
aataacatggtttgtgcctcaagtaaagggattccatcaacaagatctgctgaacatgcc
agtgaatccaaaatggagattgcaaatgccaggtcagctgattcaaaagtttctgctgtg
agagatgatgctgaagcttcagatatagtaaaatcttctagatcattgattcattctccc
cggcgagatggtgctgccccgtcctccaaatctggtgataaacctcaaaagagggccagc
cctgctgaagacgtggatagattgaataagcgtcggaaaggagagactgatttcagagat
ctagatggtggtgatgttcgagtctctgaaaaggagaggtcaattgatgccagagcaggg
gatagaccacacccagtggatgtggagaagccaggaactgatgaacagatgacaaacaga
tccatagataagtctgtagatcgatcaaaggataaaatcagtgaaagacatgacagggat
aacagggataggttggagcgtgtagataaacctcgtggggatgataatttatctgaaaaa
agagataggtcaactgaaagatatggaagagaacgctctgttgaaagagctcaagagaga
ggaggtgctgataggaactctgatagactatctaaggatgaaagaaacaaagatgatagg
agcaaagtgaggtatgcagaaacctcggtagacaaatcctataatgaagaccgcttccat
gggcaaaatttacctccacctccaccattgccgcctaacatggtcccacaatcagtcaat
gcaaacagacgggatgaggatgccgatagacgatttggaactgctagacatgctcagagg
ctttcccctagacatgaagagagagagaggagaagatcagaagagaatgttgttccacta
caagatgatccaaagcgtaggagagaggatgaatttcgagatagaaaacgtgaagaacga
gatggtgtcttgataaaggtagaggagagggatcgagaaagagaaagggagaaagtgagc
cttctgaaggaggatatagattcaaatgcgaaaaggcgaaaactgaaaagggaccacttg
ccatcagaacctggtgaatatttgccagctgctccagctcctccccttacaataaattta
tcgcaaccatatgatggaagggatagggcaggagaccggaagggagctatggtccaacgc
ccagcgtacttggaggaaccaagtttgaggatgcatggcaaagaagcaggcagcaagaca
gcccgtcgtgatactgatccgatgtacgacagagagtgggatgatgacaagaggcagaga
gttgaaccaaaaagacgacatcggaaataa
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integrated database retrieval system
