Coffea arabica (coffee): 113717669
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Entry
113717669 CDS
T11342
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113717669
09122 Translation
03013 Nucleocytoplasmic transport
113717669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113717669
03041 Spliceosome [BR:
carb03041
]
113717669
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
113717669
Spliceosome [BR:
carb03041
]
Complex C
Other components
EJC/TREX
113717669
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113717669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
LIM_bind
Motif
Other DBs
NCBI-GeneID:
113717669
NCBI-ProteinID:
XP_027098247
UniProt:
A0A6P6V8H7
LinkDB
All DBs
Position
11c:35134949..35161764
Genome browser
AA seq
1889 aa
AA seq
DB search
MSLPPVDCFYITEESVKELKNGNSSFKFPNSVPVLRFLYELCWTLVRGELPFQKCKAALE
AVEFTDCVSEEEMGSNFADVVTQLAQDLTMPGEYRLRLIKLAKWLVESALVPLRFFQERC
EEEFLWESEMIKIKATDLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLATLLCQIPETS
TENGSAALVGNIKSLIGHFDLDPNRVFDIVLESFELQPDNNVFLELIPIFPKSHASQILG
FKFQYYQRLEVNYPVPTGLYHLTALLVKKDFIDIDSIYSHLLPDDEEAFDSYNTFSARRL
DEANKIGKINLAATGKDLMDEDKQGDVTVDLFAALDIEREAVAERSSELENSQTLGLLMG
FLAVDDWYHAHMLFERLARLNPVEHVQICDGLFRLIEKSISAAYEVVCKMRLVSYSTSAG
AGIDLMQATSTSVSRSFIDLPKELFEMLVSAGPYLYRDTLLLQKVCRVLRGYYLCALELC
SNNDAPFNSHTAVISGNRTPRLHLKDARLRIEEALGICLLPSLQLIPANPAVGQEIWELL
SLLPYEARYRLYGEWEKDDEKLPMILAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAH
ANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQAGREKLKDDGL
NLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGNGIELVLLQELIQQMANVQYT
ENMTEEQLDAMAGSETLRYQATSFGVTRNNKALVKSTNRLRDALLPREEPKLAVPLLLLI
AQHRAVVVIDAAVPHIKMVSEQFDRCHGTLLQYVEFLSGAVTPTSAYALLVPTLNELVHL
YHLDPEVAFLIYRPVMRLFRCHNHLESSWPLDCNDAVTGTSADKESGTADASSSLLLNLD
SSRKPISWSDLLDTIRTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRNRYQSEIAKQHAA
LKALEELSDNSSSAITKRKKDKERIQESLDRLTMELQKHEEHVACVRRRLTREKDTWLSS
CPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVNTLHSLGTPFFNTVNHIDVLICKTLQ
PMICCCTEYEVGRLGKFLYETLKTAYFWKSDESIYERECGNMPGFAVYYRYPNSQRVTYS
QFIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKI
KGDEREDLKVLATGVAAALAARKSSWVTDEEFGMGYLDLKPAAVATSKSLGINSVGVQNG
AGQHVSVAEPAVGRSVTAGNVHSDYSNSIKDLRTRPADGRITESAALKSDSGSARAKGGS
LVNGSEHHSSVPSAAVHSGTSRSTEILKQLDESNNRSSEDITKMAVKMSTEPEGRAPVKR
SANAGSLSKQLKQDHGKDDTKSVKPVGRTSNTNGDRDPSSHISEGKQSGTAGVSSAISSN
NNMVSASSKGIPSTRSAEHASESKMEIANARSADSKVSAVRDDAEASDMVKSSRSLIHSP
RRDGAALSSKSGDKPQKRASPAEDVDRLNKRRKGETDFRDLDGGDVRVSEKERSIDARAG
DRPHPVDVEKPGTDEQMTNRSIDKSVDRSKDKISERHDRDNRDRLERVDKPRGDDNLSEK
RDRSTERYGRERSVERAQERGAADRNSDRLSKDERNKDDRSKVRYAETSVDKSYNEDRFH
GQNLPPPPPLPPNMVPQSVNANRRDEDADRRFGTARHAQRLSPRHEERERRRSEENVVPL
QDDPKRRREDEFRDRKREERDGVLIKVEERDREREREKVSLLKEDIDSNAKRRKLKRDHM
PSEPGEYLPAAPAAPLAINLSQPYDGRDRAGDRKGAMVQRPAYLEEPSLRMHGKEAASKT
ARRDTDPMYDREWDDDKRQRVEPKRRHRK
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcccgcctgtggattgcttttacataacagaagaatccgttaaagaattgaag
aatgggaattccagtttcaaatttcccaattctgtccctgttctccgcttcctctacgag
ctctgttggaccctggttcgaggggagttgccatttcagaagtgtaaagcggcgttggaa
gcggtggagttcactgactgtgtttcggaggaagaaatggggtcaaatttcgcggatgtt
gtcacccaactggctcaagatctaacaatgccgggagagtaccgcttgcggcttataaag
ctggcaaaatggctggtggaatctgcattggtaccattaagatttttccaagagcgttgt
gaggaagaatttttgtgggagtctgaaatgatcaagataaaggctacagatctgaaatca
aaagaggtcagagtaaacactcgacttctttaccagcaaacaaaatttaatcttctcaga
gaagagagcgagggatatgcaaagctggctactcttctttgtcaaattccagaaacttca
actgaaaatgggtcagcggctctagtgggtaacattaagtcgctgattggacactttgat
ctggatccaaaccgtgtgtttgacattgtcttagaatcctttgaacttcagcctgataac
aatgtgttcttggagcttattccaatttttcccaagtctcatgcctctcaaatcctgggt
ttcaagttccaatattaccagcgtttagaagtcaattatccagtaccaactgggctttat
cacctgacagctttgttggttaagaaagacttcattgatattgatagcatatattctcat
ttactacccgatgatgaggaggcatttgacagttataatactttttctgctaggagactc
gatgaggctaataaaattggaaagataaatcttgctgctactggaaaggatcttatggat
gaagataaacaaggtgatgtgacagtcgatctgtttgctgctttagacattgaaagagag
gcagttgctgagcgatcctcagagcttgaaaacagtcagactctgggcttgctaatggga
tttctggcagttgatgactggtatcatgctcatatgttgtttgaacgtctcgcaagactt
aacccagtggagcatgttcagatctgtgatggtctgtttaggctcattgagaaatcaata
tctgcagcatatgaggtggtctgcaaaatgcgacttgttagttatagtacctctgctggt
gctggtattgacttgatgcaggctacaagtacgtcagtcagtagatctttcattgacctt
cctaaggagctctttgagatgcttgtgtctgctggaccttatttgtatcgggatacttta
ttgctgcagaaggtctgcagagtgctgagaggctattatctttgtgcacttgaactttgc
agtaataatgatgcacctttcaattctcatactgctgttattagtggtaaccggactcct
cgtctccacctaaaggatgctaggttgaggattgaggaagcacttggaatatgcctactt
ccttccctacagttgatacctgcaaatcctgcggtcggccaggagatttgggaactgttg
agtctccttccttatgaggcacgatatcgattatatggtgaatgggaaaaagacgacgag
aaacttccgatgattttggctgcgaggcaaacagcaaagttggacacaaggaggatctta
aaacgccttgcaaaagaaaatctgaaacaacttggaagaatggttgcaaaattagctcat
gctaatccaatgacagtgcttcggacaattgttcatcagatagaggcctatagagatatg
attactcctgttgtggatgcatttaaatacctgactcagcttgagtatgacattctggaa
tatgttgttattgaacgtttggcgcaagctggccgtgagaagctaaaggacgatggcctt
aatttatcagattggcttcaatcattggcatcattttggggtcacttgtgtaaaaagtac
ccatcaatggaactccggggtcttttccagtatctagttaatcagttgaagaaggggaac
gggattgagcttgttctccttcaggaacttatacagcagatggcaaatgttcaatacact
gagaatatgactgaggaacaattagatgccatggctggaagtgagactcttcggtatcag
gctacttcattcggagtaacacggaataacaaggccttagtcaagtcaactaataggttg
agagatgctttgcttcccagggaagagccaaagttggcagttccgcttttgctacttatt
gcacaacatcgtgcagtggttgtcatagatgctgctgtacctcatattaaaatggttagt
gagcagtttgataggtgccacggaacccttctacagtatgtggaatttctctctggtgca
gtgactccaacatcagcttatgctcttctggttcccactcttaatgagcttgtgcacctc
taccatcttgatcctgaggtggcctttttaatttataggcctgtaatgagattgttccgg
tgccacaaccacttggaatcttcctggccattagattgcaatgatgcagtcactggtacc
tctgctgacaaggagtctggaactgcagacgcttcctcctctttacttctgaatcttgat
tcttcccgcaaacctatttcgtggtctgatcttcttgatacaatcagaacaatgttgcct
tctaaagcctggaatagcttgtctccagacctctatgcgacattttggggtcttacactt
tatgatctttatgttcctagaaatcgttaccagtctgaaattgctaagcagcatgctgct
cttaaagctctggaagaactttctgataattccagttctgcaatcaccaaacggaagaaa
gacaaagagagaatccaggagtctttagatcggttgacaatggaactccagaagcatgaa
gaacatgttgcatgtgttcgtaggcgcctaactcgtgaaaaagatacatggttgagttcc
tgtccggacactttaaagataaacatggagtttcttcagcgctgtatattccctcgttgt
acatttagcatgcctgatgctgtatactgtgccatgtttgtaaatactttgcactccctg
ggcacaccatttttcaataccgttaatcacatagatgttctcatatgtaaaacactgcaa
ccaatgatttgttgctgtactgagtatgaagtgggtcgactagggaagtttttgtacgag
acattaaagactgcttacttttggaagagtgatgaatcgatatatgaacgcgagtgtgga
aacatgcctggatttgctgtttattacagatatccgaacagccagcgtgttacttatagc
caatttatcaaggtacattggaagtggagtcagaggatcacaaggctactcatccagtgc
ttggaatcaacggagtacatggaaattcgaaatgctcttatcatgctgaccaaaatttca
agtgtttttcctgtgactcgaaagagtggtatcaatcttgaaaagcgggtagctaaaatt
aaaggtgatgaaagggaggatctcaaggtattggctacaggtgttgctgctgctttggct
gctagaaagtcttcgtgggttacagatgaagaatttggcatgggttaccttgacctgaag
cctgcagcagttgctacttcaaagtctttaggtataaattcagttggtgtacaaaatggt
gcaggccaacatgtttctgtggctgaacctgctgtagggagaagtgttactgcagggaat
gtacattcagattatagtaattccatcaaagatctaagaacaagacctgctgatggaagg
ataacagagagtgctgcactaaaatctgattcaggatctgcaagagccaaaggtggttca
ttagtgaatggctctgaacatcactcctctgtgccatctgctgctgtacacagtgggaca
tccaggtcaactgaaatcctaaaacaactagatgaatcaaataataggtcttccgaggat
atcacaaaaatggctgtgaagatgtccactgaacccgagggaagagctccagttaaacga
tctgctaatgctgggtccctctcaaaacaactaaagcaggatcatgggaaggacgatact
aaatctgtaaaacctgttggcagaacttcaaacactaatggcgacagagatccatcttct
cacatctctgaaggcaaacaaagtgggactgctggtgtttcttctgcaatttctagcaat
aataacatggtttctgcctcaagtaaagggattccatcaacaagatctgctgaacatgcc
agtgaatccaaaatggagattgcaaatgccaggtcagctgattccaaagtttctgctgtg
agagatgatgctgaagcttcagatatggtaaaatcttctagatcattgattcattctccc
cggcgagatggtgctgccctgtcctccaaatctggtgataaacctcaaaagagggccagc
cctgctgaagacgtggatagattgaataagcgtcggaaaggagagactgatttcagagat
ctagatggtggtgatgttcgagtctctgaaaaggagaggtcaattgatgccagagcaggg
gatagaccacacccagtggatgtggagaagccaggaactgatgaacagatgacaaacaga
tccatagataagtctgtagatcgatcaaaggataaaatcagtgaaagacatgacagggat
aacagggataggttggagcgtgtagataaacctcgtggggatgataatttatctgaaaaa
agagataggtcaactgaaagatatggaagagaacgctctgttgaaagagctcaagagaga
ggagctgctgataggaactctgatagactatctaaggatgaaagaaacaaagatgatagg
agcaaagtgaggtatgcagaaacctcggtagacaaatcctataatgaagaccgcttccat
gggcaaaatttacctccacctccaccattgccgcctaacatggtcccacaatcagtcaat
gcaaacagacgggatgaggatgccgatagacgatttggaactgctagacatgctcagagg
ctttcccctagacatgaagagagagagaggagaagatcagaagagaatgttgttccacta
caagatgatccaaagcgtaggagagaggatgaatttcgagatagaaaacgtgaagaacga
gatggtgtcttgataaaggtagaggagagggatcgagaaagagaaagggagaaagtgagc
cttctgaaggaggatatagattcaaatgcgaaaaggcgaaaactgaaaagggaccacatg
ccatcagaacctggtgaatatttgccagctgctccagctgctccccttgcaataaattta
tcgcaaccatatgatggaagggatagggcaggagaccggaagggagctatggtccaacgc
ccagcgtacttggaggagccaagtttgaggatgcatggcaaagaagcagccagcaagaca
gcccgtcgtgatactgatccgatgtatgacagagagtgggatgatgacaagaggcagaga
gttgaaccgaaaagacgacatcggaaataa
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integrated database retrieval system
