Coffea arabica (coffee): 113717898
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Entry
113717898 CDS
T11342
Name
(RefSeq) DNA mismatch repair protein PMS1-like
KO
K10858
DNA mismatch repair protein PMS2
Organism
carb Coffea arabica (coffee)
Pathway
carb03430
Mismatch repair
carb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113717898
03460 Fanconi anemia pathway
113717898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113717898
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
113717898
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GFIT
Other DBs
NCBI-GeneID:
113717898
NCBI-ProteinID:
XP_027098545
UniProt:
A0A6P6V791
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Position
1e:54592975..54599596
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AA seq
927 aa
AA seq
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MATKGGPSMMLDKDSATIRPINKGVVHRICAGQVILDLSSAVKELVENSLDAGATSIEIA
LKDYGEESFQVIDNGCGISPHNFKVLALKHHTSKISDFPDLQSLATFGFRGEALSSLCAL
GELTVETRTQNEAVATHLTFNHSGLLVTERKTARQIGTTVTVKKLFSSLPVRSKEFHRNI
RKEYGKLITLLNAYALIAKGVRLVCTNTAGKNAKSVVLRTQGSGSLRDNIITVLGMNTFT
CLEPVEVSISDGCTVDGFLSKPGYGSGRNLGDRQFFFVNGRPVDMPKVSKLVNELYRGAN
SRQFPIAIMNFTVPARSYDVNVTPDKRKIFFSDEVSILRTLREALEKIYSPDSASYLVHE
LDEQSKKKSTSKFHFKQENSQLQRRQSSHDDCDKAEACDKKQLLDGDTLCIADKKDMNDI
SIVEVKDGNLNHSAGQDFLLRVHSTKKEDTLSRCSYNKCKDPSSTTEKKPLPLSSSPPEE
SCDDNSRLQCRSTIFQSSLKKFVNVTKRKHESISNALSEVPLLRSSLTSCQSKELRFGKH
NTHPNLPVNSMIIDDSDEFSNNGPEPSECVRVNQVCHERGTAFPDDKAMENRESTQQLKL
EETVLRIPTSNNLENMSEDLLDETIRLESSDPSSDSPISSLTVGCTLQFSFKELTTRRQQ
RLARLHILNHTSRKMKIKGSYTAATLELSQMTNDEGKSRALAAATSELERLFKKEDFERM
KVIGQFNLGFIIAKLDHDLFIVDQHAADEKYNYERLSQSTVLNQQPLLQPLRLELSPEEE
IVTSMHMDIIRRNGFSLEEDVHAPPGQRFKIKAVPFSKNIIFGVADVKDLLSILADSHGE
CSIIGSYRSDTADSVCPPRVRAMLASRACRSSVMVGDPLGRNEMQKILEHLAGLKSPWNC
PHGRPTMRHLVDLTTVRGRINVEEEAM
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaaaggtgggccttcgatgatgttggacaaggattctgctaccatccgccct
ataaataagggcgttgttcaccgaatctgcgctggacaagtgattttagacctttcctcc
gccgtcaaggagctcgttgagaacagcttggatgccggcgccaccagcatcgagatcgct
cttaaagattacggagaagaatccttccaggttatcgacaacggttgcggcatttctcct
cacaactttaaggttcttgcactgaagcatcatacgtcaaagatatcagattttccggat
cttcagtcattagcaacatttggattcagaggcgaggcgttgagctccctgtgtgctctg
ggggagttaactgttgagacaaggacccagaacgaagcagttgcgacacacttgactttc
aaccactccgggcttcttgtcactgaaaggaaaacagcacgacagattggcaccactgtc
accgtgaagaagttgttttctagtttgccagtgaggagcaaagagtttcaccgcaatata
cgcaaggaatatgggaagcttatcactttgttgaatgcctatgctcttattgctaaggga
gttagactagtatgcacaaatacagctggaaaaaatgcaaagtctgtggtacttaggaca
caaggaagtggatcccttagagataacatcataacagtacttggtatgaacacctttacc
tgcttggagcctgtggaagtgagtatatcagatggttgcacagttgatggttttctttca
aagcctggatatggaagcggacgcaatttaggagatcgacagttcttctttgtaaatggc
cgacctgttgatatgccgaaagtaagtaaacttgtgaatgaattgtatagaggtgcaaac
tcccgacagtttccaattgcaataatgaatttcacagttcccgctagatcgtatgatgta
aatgttacgcctgacaaaagaaaaatatttttttctgatgaagtatccattttgcgcacc
ttaagagaagcgctggaaaagatttactcaccagattctgcaagttatttagtgcatgaa
cttgatgagcagagcaagaagaaatctacttccaagtttcattttaaacaagagaactca
cagctgcagagaaggcaatcatctcatgatgactgtgataaagctgaagcatgtgacaaa
aagcaacttctggatggtgatactctatgtatagcagataaaaaggacatgaatgatatt
tctattgtggaggtgaaggatggcaatctcaaccattcagcaggacaagactttcttctg
agagtccatagcactaagaaggaagataccttgtctagatgttcctacaacaaatgtaag
gatcctagtagtactacagaaaagaaacctttgcctcttagttcaagcccaccagaggaa
tcatgtgatgataattcacgtttgcagtgccgttcaactatttttcagtcatcgctgaag
aagtttgtaaatgtaactaaaagaaagcatgagagtatcagcaatgcactctcagaagtc
cctctccttagaagcagcttaacttcctgtcaatcaaaggaactcagatttggtaagcac
aatacacaccctaatttgccggtgaacagcatgataattgatgattcagatgaatttagt
aataatgggcctgaaccatctgaatgtgtaagagttaaccaagtttgccatgagagaggc
acggcatttcctgatgataaagctatggaaaatcgagaatcaacacagcaacttaaattg
gaagagacagtgttgcgtattcctacaagcaacaatttagaaaatatgtctgaggaccta
ctggatgagaccataagattggagtcttctgatccatcttcagattctccaatttctagt
ctgaccgttggatgtacattgcaatttagttttaaagaactgacaacgaggaggcagcag
aggcttgcaagattgcatatcctgaatcatacctctcgaaagatgaagattaaagggtcc
tacactgcagcaactttagagctctcccagatgacaaatgatgaaggtaaatcaagagcc
ttagctgctgctacaagtgagttggaaaggctattcaagaaggaagactttgaacggatg
aaggttattgggcaatttaatcttggatttatcattgcaaagttagatcatgatcttttc
atagtggatcagcatgctgcagatgagaaatacaattatgagcggctgtcacagtcaaca
gtcctaaaccagcaacctttactccagccattgagattggagttatcccctgaagaagaa
atagtcacttcaatgcatatggatataatcaggagaaatggtttctcattggaagaggat
gtgcatgctcctcctgggcagcgctttaaaatcaaagcagttccattcagtaaaaacatt
atttttggcgttgcagatgtcaaggatctgctgtcaattcttgctgatagccacggggaa
tgctctatcattggcagttatagatcagatactgctgattcagtttgccctcctagagtt
cgtgcgatgcttgcatcacgtgcttgtaggtcatctgttatggttggagatccccttggg
agaaatgaaatgcagaagatacttgaacatttggcgggcttgaagtctccttggaattgc
cctcatggccgacctacaatgcgtcatttggttgatttaacaaccgtccgtggaagaata
aatgtggaggaagaagccatgtaa
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