Coffea arabica (coffee): 113718615
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Entry
113718615 CDS
T11342
Name
(RefSeq) DNA mismatch repair protein MSH6-like isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
carb Coffea arabica (coffee)
Pathway
carb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113718615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113718615
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113718615
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Tudor_KDM3B
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
113718615
NCBI-ProteinID:
XP_027099310
UniProt:
A0A6P6V9N4
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Position
1e:complement(55111220..55121493)
Genome browser
AA seq
1300 aa
AA seq
DB search
MAPSGRRTSNGRSPLVNQQQQITSFFSKKTSSSSSPSPTAPPLFSTPKLTTKKPSPTTDC
SPSSSPFTPSPLETRPKKPLLVIRPSSPSASASPMKSYGPEVVDKRIRVYWPLDQSWYHG
CVKHFDEISGKHLVLYDDADEELLNLAEEKIEWPVGEVPVRGRFRRLRRISIVEDDEEND
CVEKESGGNDDEESGWNAAEREVVEDVPVGMELEEDYDGVCSGKITSGRSSKRKMGGAAK
LGANSSKKIKNVGDTEQIDSKISCHVKGENLIEPAGNNVISEKGIDSCRTSIDVAEERFG
AREAGKLWFLGKDRRDANRRRPGHVDYDPKTLYLPPEFLKRLSDGQRQWWDFKSKHMDKV
MFFKMGKFYELFEMDAHVGAKELDLQYMKGDQPHCGFPEKNFSMNVEKLARKGYRVLVVE
QTETPEQLEMRRREMGSKDKVVKREICAVVTKGTLTEGEMLSANPDAAYLMSVIENFPSS
GNQLAQQIFGVCVVDVATSKIMLGQFRDDSDCSILCCLLSELRPVEIVKPAKLLSPETER
LLLRHTRNPLINELLPLSEFWDAEKTINEVNCIFQRINNQTCSLSQNGAVSHAIQSSVKD
GGECLPDILAELLAAGENGSYALSALGGILFYLKKAFLDESLLRFAKFESLPCSGLGNIS
QMPYMVLDAAALENLEIFENSRNGDSFGTLYAQMNHCVTAFGKRLLKKWLARPLCHVELI
HERQDAVAGLKGVNLPSVLEFRKELSRLQDVERLLARIFASSEATGRNANKVILYEDAAK
KQLQEFISALRGCELIYHACSSLASILENVDSRLLHHLLTPGKGLPDVHSVMKHFMDAFD
WVEANNSGRIIPRKGADKEYDDACKNVREVESYLMEHLKEQRRLLGDASVNYVTVGKDAY
LLEVPESLCRRTPRDYELQSSKKGFFRYWTPVIKKLLGELSQAESEKESKLKSIFQRLVG
RFSAHHNMWRQLVSTAAELDVLISISIACDYYEGQACRPIITGSSSPDAVPCLTAKSLGH
PTLRSDSLGKGGFVPNDVTLGGSEHASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVP
AQSFVMSPVDRIFVRMGAIDHIMAGQSTFLTELLETASMLSLATRNSIVALDELGRGTST
SDGQAIAESVLDHFAHKVHCRGMVSTHYHRLAIDYERDPKVSLFHMACQVGRGIEGLEDV
TFLYRLTPGACPKSYGVNVARLAGLPDAVLQKATLKSRDFEETYGRIKGPKDKFSTHQKE
ELKNVMKNLSTIVANNSCHQSAVSTLAELRGKARLLLERS
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atggcgccttctggtcgtcggacgagcaatggccgatcaccgcttgtcaatcaacagcag
cagatcacctctttcttctccaagaagacatcatcgtcgtcatccccatcaccaactgct
ccccccttattttccacccccaagctcaccactaagaaacctagccctaccactgattgt
agccccagctccagcccgttcactccttcacctctcgaaaccagaccaaagaaaccgtta
ctagtcatccgcccttcctcaccttctgcttcggcttctcccatgaaatcctacggacct
gaggttgtcgataaaagaattagggtttactggccgttggaccagtcgtggtaccatggc
tgcgtcaaacatttcgatgaaatctctggtaagcatttggttctctatgatgatgcggat
gaggaattattgaacctcgccgaggaaaagattgagtggccggttggggaggtacctgtc
agggggaggttccgccgtttgcgacggatttcaattgtggaagatgatgaggagaacgac
tgtgtggagaaggagagcggtggcaatgatgatgaggagtcgggatggaatgctgcggaa
agagaggtggtcgaggatgttcccgtgggcatggaattggaggaggattatgatggagtg
tgtagtggaaaaataactagtggaagaagcagtaagcgtaagatgggtggggcggcgaag
ctgggtgctaattcttctaagaagataaagaatgttggagataccgagcaaattgacagc
aagatttcttgtcatgtcaagggtgaaaatttgattgaacctgctgggaacaatgtaatt
agtgagaagggtattgatagttgtagaacttcaatagatgttgccgaagaaagatttggt
gcacgcgaagcaggaaagctgtggttcttggggaaggaccgtagggatgccaatagacga
cgtcctggacatgtggattatgatccaaaaactttgtacttgccgccagagtttttaaaa
cgtttatcagatggccagagacaatggtgggactttaagtcaaagcacatggacaaggtt
atgtttttcaagatgggcaaattttatgaactctttgaaatggacgcacatgttggtgcc
aaagagctggatttgcaatacatgaagggagatcaacctcattgtggctttccagaaaag
aacttctcaatgaatgtggaaaaactggcaagaaagggttatcgtgttcttgttgtggag
caaacagaaacacctgagcagcttgagatgcgtcgcagagagatgggctctaaagataag
gttgtaaaacgtgaaatatgtgctgtagtcacaaaaggaacattaacagaaggagaaatg
ctctcagcaaaccctgatgctgcttatttgatgtcagtgattgaaaactttccaagctca
ggaaatcagcttgcacagcaaatattcggtgtatgtgtggttgacgtagccacaagcaag
attatgcttggacagttcagggatgattcagactgcagcatcctctgttgtctattatct
gagttaaggccggtggaaatcgttaaacctgctaaactgctaagccctgagacggagaga
ctacttctacgacatacacggaatcctttaattaatgagttgcttcctctttcggaattc
tgggatgcagagaaaaccataaatgaagtaaattgtatttttcagcgaattaataatcag
acatgttctttatctcaaaatggtgcagtgtcacatgcaattcaatcttcagttaaagat
ggtggggaatgcttgccagacattttggctgagcttctggctgcaggggagaacggaagc
tatgcactctcagctcttggaggcattcttttctacttgaagaaagcttttctggatgaa
tctctacttagatttgcgaagtttgagtcactcccgtgttctggtttgggtaatatttct
caaatgccatacatggttttggatgcagctgctttggagaatcttgagatttttgaaaac
agcagaaatggagatagttttgggacattgtatgcacagatgaaccattgtgtgacagct
tttggcaaaaggttacttaaaaaatggcttgcaaggcctttgtgtcatgtggaattgata
catgaacgccaggatgctgtagcaggactaaagggagttaatctaccttccgtccttgag
ttccgaaaagagttgtccaggcttcaagatgttgagcgtttgcttgcacgcatcttcgca
agcagtgaagccactggaaggaatgcaaataaagtaatcctgtatgaggatgcagcaaag
aagcagcttcaagagtttatatcagctttgcgtggatgtgaactcatttatcatgcatgc
tcttcacttgcttcaattttggaaaatgtggattcgaggctattacatcatttattgact
cctggtaaaggtcttcctgatgtacattcagttatgaagcacttcatggatgcttttgac
tgggtggaagcaaataattctggtcgtataatacctagaaaaggggctgataaagaatat
gatgatgcctgcaaaaatgtcagggaggtggaatcttatttgatggaacatttgaaggag
cagcgcaggttacttggagatgcatctgtcaattacgttacagtggggaaagatgcctac
cttttggaagtgccagaaagtttgtgcaggaggactccgcgtgattatgagttacaatca
tctaaaaagggttttttccgttattggacccccgttatcaaaaagttgttgggtgagctg
tcacaggcggaatctgaaaaggaatccaagttgaaaagcatcttccagaggttggttgga
agattcagtgcgcatcataatatgtggagacagttggtttctactgctgcagagctggat
gttttaattagcatctctattgcatgtgactactatgaaggacaagcttgtcgtccaatt
attactggctcatcgtctccagatgcagtgccctgccttactgccaaaagtttagggcac
cctacccttagaagtgattctctaggcaagggtggctttgtccccaatgatgttactctt
ggtggttctgaacatgccagctttatcttgctcactgggcctaacatgggtggaaagtca
actcttctgcgtcaagtttgcttggctgttattctggcacaggtcggagcagatgtacca
gctcaaagctttgtcatgtctcctgttgaccgcatctttgttcgaatgggtgcaatagat
cacattatggcagggcaaagtacattcttgacagaacttttagaaactgcatctatgctg
tcattggcaactagaaattcaattgttgcattggatgagcttggacgaggaacgtcaact
tcagatggacaagcaatagctgaatctgttcttgatcactttgcccacaaggtacattgt
cgaggaatggtctctactcattatcatcgattggctattgactatgagagagatcccaag
gtttccctgtttcacatggcatgccaagttggcagaggaattgaaggtctggaggatgtt
acatttctttacaggttgacccctggtgcgtgccccaaaagttatggtgtcaatgttgca
aggctagctggacttcctgatgctgtgctccagaaggccacattgaagtctcgagatttt
gaggaaacctatgggagaataaagggaccgaaggacaaattttcaactcatcagaaagaa
gagctgaaaaatgtgatgaagaatttatcaaccattgtggccaacaacagttgccatcaa
agtgcggtttctacgctagccgaactgcgaggaaaagcaaggttacttctagaacgaagt
taa
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