Coffea arabica (coffee): 113718627
Help
Entry
113718627 CDS
T11342
Name
(RefSeq) DNA polymerase lambda-like isoform X1
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
carb Coffea arabica (coffee)
Pathway
carb03410
Base excision repair
carb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
113718627
03450 Non-homologous end-joining
113718627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113718627
Enzymes [BR:
carb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
113718627
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
113718627
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
113718627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_8
BRCT
HHH_5
NTP_transf_2
Cdd1
BRCT_2
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
113718627
NCBI-ProteinID:
XP_071928784
UniProt:
A0ABM4WAH1
LinkDB
All DBs
Position
11e:60112190..60119871
Genome browser
AA seq
554 aa
AA seq
DB search
MAPRRSTPAITNKTKKKAKSPPSDPQGMFSGMVVHLIESGVQARRLQIWKHRLEQLGAKI
EVDFSKNVTHVFALNLDTLIQKVDLELVKRLKTIVLSYQWLEDSLREGKKVLEESYILSL
ERGGGDKISNTAEETFPKLLNDVHSGASETLQQKRIRISPMDLADTNLKNTVKLEENAVP
ESPDSSSGSYGSMHSLSPEITGPSIDAQHKTVLTSDSALLYSPPDLNRNITEIFGRLINI
YRALGDDWRSFSYHKAIPVIEKLPFKIESVEQVKHLPGIGKSMQDHIQEIVTTGKLSKLE
HFETDEKVKTISLFGEIWGIGPATALKLYEKGHRTLDDLKNEESLTNAQRLGLKYFDDIR
KRIPRHEVEEMGHLLKKAGDDVLPGVEIVCGGSYRRGKASCGDLDILITHPDGKSHVGFL
PQYVKHLKDMKFLREDLVFSVHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIHA
FGLIAWTGNDVLNRRLRILAESKGFRLDDTGLFPATRGSGGQRGKGSASLKLRTEKEVFD
FLGFPWLEPHERNL
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaaggagaagcactcctgctattactaataagacgaagaagaaggctaaatct
ccgccgtccgatcctcaaggaatgttctccgggatggttgttcacttaatcgaaagcgga
gttcaggcccgtcggttacagatttggaagcacagattagagcaattgggggcgaaaata
gaggttgatttctcgaaaaatgttacgcatgtgtttgctttaaacttagatacattgatt
caaaaagttgatcttgaactcgtaaagcgcttgaaaacgatagttctcagttatcagtgg
cttgaagacagcttgagagaaggaaaaaaagtacttgaagaatcatatattctgtcattg
gagagaggaggaggtgacaagataagcaacactgcagaagaaactttccccaaactcttg
aatgatgtccattctggtgctagtgaaacattacagcaaaaaaggatcagaatttcacca
atggatcttgcagatacaaatctgaagaacacagtcaaattggaggaaaatgcagtacct
gagtcacctgattcttcaagtggttcatatggctctatgcattctttaagtcccgaaatc
actggcccatcaattgatgctcaacacaagactgttttgacttcagactcagccttgctt
tacagtcctcctgatttaaacaggaatataactgagatatttgggaggcttataaacata
tatagagctcttggtgacgattggaggtcatttagctatcacaaagccattcctgtgatt
gaaaagctgcctttcaaaattgagagtgtggaacaggttaaacacttacctggtattggc
aagtcaatgcaagatcacattcaggagatagtgacaactgggaagttatccaagttggag
cactttgagacggatgaaaaggtaaagacaattagtttgtttggagaaatatggggaatt
ggtccagccactgctttgaagctttatgaaaaaggccaccgaactttggatgacctgaaa
aatgaggagtcattgacaaatgcacagaggttggggttgaagtactttgatgatatcaga
aaaaggattccaaggcatgaggttgaagagatgggacatcttctaaagaaagctggagat
gatgttttgcctggggtagaaattgtttgtggaggatcttatcgacggggaaaggcttct
tgtggggatttggacatattaattactcatcctgatggtaaaagtcatgtaggctttctc
ccacagtatgtgaagcacctgaaagacatgaagttcttgagagaagatttggtctttagt
gttcacagtgaagagggtacagattcaggagtggacacttactttggcctttgcacttac
cctggacgagaattgcggcaccgcatagacttcaaggtttatccaagggacatccatgca
tttggattgatagcttggacggggaatgacgtattgaacaggaggttgagaatactggca
gaatccaagggtttccgattggatgatacagggttatttccagctactcgtggctctggt
ggccaacggggtaaaggtagtgccagtttgaaacttcggacagaaaaagaggtctttgat
ttccttggctttccttggcttgaaccgcatgaaagaaatttataa
DBGET
integrated database retrieval system
