KEGG   Coffea arabica (coffee): 113721426
Entry
113721426         CDS       T11342                                 
Name
(RefSeq) THO complex subunit 4A-like isoform X1
  KO
K12881  THO complex subunit 4
Organism
carb  Coffea arabica (coffee)
Pathway
carb03013  Nucleocytoplasmic transport
carb03015  mRNA surveillance pathway
carb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113721426
  09122 Translation
   03013 Nucleocytoplasmic transport
    113721426
   03015 mRNA surveillance pathway
    113721426
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:carb03019]
    113721426
   03041 Spliceosome [BR:carb03041]
    113721426
Messenger RNA biogenesis [BR:carb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     113721426
    TREX complex
     113721426
Spliceosome [BR:carb03041]
 Complex C
  Other components
   EJC/TREX
    113721426
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    113721426
SSDB
Motif
Pfam: RRM_1 FoP_duplication YHR127W_C EBNA2_Core
Other DBs
NCBI-GeneID: 113721426
NCBI-ProteinID: XP_027101349
UniProt: A0A6P6VEE6
LinkDB
Position
2c
AA seq 235 aa
MADLLDMSLDDLINRNRKSGGDHGNFRGRGGGRGRGLGQAHCMSSGPGPTRRTPVFVPYR
TVPYLRPRVAVTSRSPGLWMLEEEGASSGTKLYVSNLYYGVTNDDIKVLFSDVGELKRYA
IHYDRTGKSMGTAEVVFARHSDALKAINRYNDLLLDGRPIKIEIIGVDFVPSAVPPSSEG
GLGYQSGAFGSRDGFKQAGRRGQEGRGKKNLAEKVSAEALDADLEKYHEDALLSS
NT seq 708 nt   +upstreamnt  +downstreamnt
atggccgatcttctggacatgtccctagacgatcttatcaacagaaacaggaaatctgga
ggagatcatggtaatttcagaggccgcggaggaggacgtggccgtggccttggccaagct
cactgtatgagttctggtcccggcccaacccgccggacaccggtcttcgttccgtaccgt
acggttccgtaccttcgaccacgtgtggctgtgacttcaagatctccggggctttggatg
cttgaagaagaaggggctagcagtgggacaaaactctacgtgtccaacctctattatggg
gttactaatgacgatatcaaggtactattttcagatgttggtgagctaaagcgatatgca
attcactatgaccggactggaaagtccatgggtactgcagaagtggtatttgcacgacat
tcagatgctttaaaagctatcaatagatacaatgatttgctgcttgatgggaggccaatc
aaaattgagattataggagttgattttgttccatctgctgtgcctccatcaagtgaaggc
ggtttgggatatcaaagtggggccttcggaagcagggatgggtttaagcaagcagggaga
cgtggacaggaaggtcgaggaaagaaaaatcttgctgaaaaagtctcagctgaagctctt
gatgctgatttggagaaatatcatgaagatgctctgctaagcagctaa

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