Coffea arabica (coffee): 113723063
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Entry
113723063 CDS
T11342
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 2, mitochondrial-like isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113723063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113723063
03016 Transfer RNA biogenesis [BR:
carb03016
]
113723063
Enzymes [BR:
carb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
113723063
Messenger RNA biogenesis [BR:
carb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
113723063
Transfer RNA biogenesis [BR:
carb03016
]
Prokaryotic type
tRNA degradation factors
113723063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_PNO1_2nd
KH-I_KHDC4-BBP
Urease_gamma
Motif
Other DBs
NCBI-GeneID:
113723063
NCBI-ProteinID:
XP_027102127
UniProt:
A0A6P6VJL7
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All DBs
Position
7e:complement(2486041..2496306)
Genome browser
AA seq
972 aa
AA seq
DB search
MASVSSKANPLISTLPHILTWPRFRFRTMCSARLGFASYSSSSTSASVSPVTSETPAAGT
KVLETFKEEFEIGSRPITLETGKIARFANGAVVLAMEETKVLSTVASAKGDGVRDFLPLT
VEYQEKQFAQGVIPNTYMRREGAPKERELLCGRLIDRPIRPLFPPGFYHEVQVMASVLSS
DGKQDPDVMAANATSAALMLSDIPWGGPIGVIRIGRICGRFIVNPSINELSMSDLNLVYA
CTRDKTLMIDVQAREISERDLEAALRLAHPEAVKYLEPQIRLAAKAGKQKKEYKLSMVSK
ETIEKIRNLAEAPIEAVFTDPTYGKFERGEALDRITQDVKKALEEERDEEGLKFLSKTVD
TVRKEVVRRRIISEGSRVDGRVLDEVRPVYCEAGNLPVLHGSSLFSRGDTQVLCTVTLGA
PGQAQRLDSVVGPSTKRFMLHYSFPPFCINEVGKRVGLNRREVGHGTLAEKALLAVLPPE
DDFPYTVRINSEVMASDGSTSMATVCGGSMALMDAGIAVREHVAGVSVGLVSEVDSATGE
IKDYRILSDILGLEDHLGDMDFKIAGTRKGVTAIQLDIKPAGIPLDIICECLEPALKGRL
QILDHMEREIDAPRAKDDRNSPRLATLKYSNDAIRRLIGPLGALKRKIEEETGARISVSD
GTLTILTKNQAVMEKVQEKVDLVIGREIEVGGIYKGTITSIKEYGAFVEFNGGQQGLLHI
SELSNEPVTRVSDVVSVGQQLSLMCIGQDVRGNIKLSLKATLHRIGSNADDTVGELKVSA
PKEPNVLPPVNQLHIQQEKEDSPSEDQPFEHNMNVEISSSSSPVILIRSAAECEEEEKNS
AVDLSSRNGSFTSRSSLKLKTEAPDLNFRSDDEDTDERHTADPSLLQNNPNDMETDNVPN
ISARQLKIGMVLTAKVHQIRARGLVLDLGGGIRGMYRFETGVKRYFGVGEELRVKCSSFS
GKGIPVMSLLEE
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagtaagcagcaaagccaacccactcatttcgacccttcctcacattctcaca
tggcccaggttccgattccgcaccatgtgcagcgcccgtctcggctttgcttcctactcc
tcctcatccacatcagcctctgtctcaccagtcacttctgaaaccccagccgccggaaca
aaggttcttgaaacttttaaggaagaattcgaaatcggatcgcgcccaattacgctggaa
actggaaagatcgctcggtttgctaatggggctgttgttttggccatggaagagacaaag
gttctctccactgttgcttcggctaaaggcgacggcgttcgcgatttcttgcccctcact
gttgaataccaagagaaacagtttgcccaaggtgtcataccaaacacatacatgcgaaga
gagggcgctccaaaagagcgtgaacttttatgtggtcgtctcattgatcgacctatacgc
ccgctttttcctcctggattttaccatgaggttcaggtaatggcaagtgttctttcttca
gatgggaagcaagatcctgatgtaatggcagctaatgctacatctgctgctcttatgtta
tcagatatcccttggggtggcccaattggtgtgatacgtatagggagaatttgtggtcgg
ttcatagttaatccaagcattaatgagcttagcatgagtgatctcaacttggtatatgct
tgcacaagggataaaacactgatgatagatgtacaagcacgtgaaatttcagaaagggat
ttagaagctgcactgagactggctcatcctgaggcagttaagtatctagagcctcaaatc
agactggcagcaaaagctggtaagcagaagaaggaatacaagttgtccatggtatcaaaa
gagactatagagaaaatcaggaatctagctgaagcaccaattgaggctgtgttcactgat
cctacatatggcaagtttgaacgtggagaagccttagataggataactcaagatgtcaaa
aaagcgcttgaggaagaacgcgatgaagaaggcttgaaatttttatcaaagacagttgac
acagtaaggaaagaggttgtccgcagaaggattatatctgaaggatcaagggttgatggc
agagttcttgatgaagttaggcctgtgtattgtgaagctggtaacttgcctgtgctgcat
ggatcatctttgttttcacgtggagatactcaggttctttgtactgtgactcttggagct
cctggacaggctcaacgattggattccgttgttggtccttcgaccaagcgcttcatgctt
cactatagtttccccccattttgcattaatgaagttggtaaacgagttgggctcaacaga
cgtgaagtaggacatggaactcttgctgagaaagctttgctggctgttttaccacctgaa
gatgactttccatacacagttcgtatcaattctgaagtcatggcatctgatggttccaca
tcaatggcaactgtctgtggaggcagcatggcattaatggatgcagggatcgcggtgaga
gagcatgttgcaggtgtatcagttggtcttgttagcgaagttgactctgcaactggtgaa
atcaaggattatcgtatattaagtgatattttagggctggaagatcatctaggtgacatg
gactttaaaattgctggcactcgaaagggagttacagcaattcaattggatataaaacct
gctgggattccattggatatcatatgtgagtgcctggaaccggcccttaaaggccggctt
cagatccttgaccacatggagcgagagattgatgcaccacgtgctaaggatgaccggaat
tctcctcgattagccacattaaagtacagcaatgatgctattcgccgcctgattggacct
cttggtgctttgaagaggaaaattgaagaagagacgggtgcaaggatatctgtaagtgat
ggaacacttactatacttacaaaaaatcaagcagtaatggagaaagtacaagagaaggtt
gatctagtaattggccgtgagatagaagttggtggcatctataaaggcactattacctca
ataaaagaatatggcgcttttgtggaatttaatggtggtcagcaaggtctgcttcacatt
tctgaattgtcaaatgaaccagttactcgagtttcagatgtagtatcagttggccagcaa
ctttcattaatgtgcatcgggcaggatgttcgtggtaacattaagttatctcttaaagct
acgcttcatagaattggatccaatgcagatgatacagttggagaattgaaggtttcagcc
ccaaaagagcctaatgttttgccacccgttaatcagctgcacattcagcaggaaaaggag
gattctccctcggaagatcagccttttgaacacaatatgaatgtggaaatatcgtcatca
tcctcacctgtgattctaatccggagtgctgctgagtgtgaggaagaagaaaaaaattct
gctgtggatttgagttccagaaacggttcttttacttccagaagttctttaaaattgaaa
actgaagcacctgatctgaactttagaagtgacgatgaagatacggatgaaagacacact
gcagacccaagtctgttgcagaacaatccgaatgacatggaaaccgacaatgtgcctaac
ataagtgcgaggcagctgaagattggtatggtgttgactgctaaggttcatcagatacgt
gcacgtggcttagtccttgacttgggtggtggaatccgcggaatgtatcgatttgagact
ggtgtcaagaggtactttggggttggtgaagagctacgggtgaaatgttcaagtttttct
ggtaaggggattccggtcatgtctttgttggaagagtag
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