Coffea arabica (coffee): 113723123
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Entry
113723123 CDS
T11342
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
carb Coffea arabica (coffee)
Pathway
carb00040
Pentose and glucuronate interconversions
carb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
113723123
Enzymes [BR:
carb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
113723123
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
113723123
NCBI-ProteinID:
XP_071915034
UniProt:
A0ABM4V680
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Position
7e:3360654..3363099
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AA seq
416 aa
AA seq
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MGSSELTNCFFLLFFGLASVVPALTTANVFVRDEGALHRFHDLMPLNATIRRELRGRRYR
GPCMATNVIDKCWRCDPNWANNRQRLADCAQGFGRAAKGGQGGPIYVVTDPSDDNVAEPR
PGTLRHAVIQKGPLWIIFARSMTITLSQELIMQSHKTIDGRGVNVHIAYGAGFTIQFVRN
IIIHNLHIHDVKTTSGGMIRDSVDHVGLRTANEGDGISIFGARDVWLDHLSMSKCSDGLI
DAVQASTAITISNCHFTDHDKVLLFGASDVTEVDKNMQITVAFNHFGKRLVQRMPRCRSG
FFHLVNNDYTHWEMYAIGGSHDATIISQGNRFIAPPLSQFFKEVTHRDAPVALWSKWTWV
SDGDVFLNGARFVPSGNPDGARQFAALELIKAAPGTEVFTLTRFSGFLGCVIGRAC
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggggtcatctgaactcaccaattgcttttttctcctcttcttcggtttggcttcagtt
gttcccgcactgactacagcaaatgtatttgtacgtgatgaaggggctttacaccggttt
catgacttgatgccattgaatgccaccatcagaagagagctcaggggaaggagatacaga
gggccatgcatggccaccaacgtgattgacaaatgctggagatgcgaccccaactgggct
aataacaggcagcggctggcagattgtgcccaaggtttcggccgcgctgccaagggtggc
caaggtggcccaatctacgtggttactgatccctcggacgataatgtggctgagccaaga
ccaggcaccctcaggcatgctgtgatccagaaagggccactgtggatcatatttgctcga
agcatgacaattaccctttctcaggaattgatcatgcagagtcacaaaacaatcgacggg
cgcggtgtcaatgtccacattgcttatggcgctggtttcaccatccaatttgtgcggaat
atcatcattcataatcttcatatccacgatgtcaaaacaacatccgggggcatgatcagg
gactccgtggatcatgttggcttaaggactgctaatgaaggcgatggaattagcatcttt
ggagctagggatgtttggcttgatcatctctccatgtctaaatgttctgatggcctcatc
gacgccgtccaggcttcgactgcaatcaccatctcgaattgccactttactgatcacgac
aaggtgttgctattcggtgccagcgacgtcaccgaggtggataagaacatgcagatcaca
gttgcattcaaccattttggcaagagactggtacagagaatgccaaggtgccgatcggga
ttcttccatctagttaacaatgactacacccattgggaaatgtatgcaattggtggaagc
catgacgctacaattataagccagggtaaccgtttcatcgcccctccgctttcacaattt
ttcaaagaggtaacgcatagggatgctccagttgccttgtggagtaaatggacatgggtg
tcagatggagatgttttcttgaatggagctagatttgtaccctctggaaatccagacgga
gctaggcaattcgccgctctcgaattgatcaaagcagctccggggacggaagttttcacg
ttgacaagattctcaggttttcttggttgcgtgattggacgggcctgctag
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