Coffea arabica (coffee): 113723129
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Entry
113723129 CDS
T11342
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113723129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
carb03041
]
113723129
03009 Ribosome biogenesis [BR:
carb03009
]
113723129
Enzymes [BR:
carb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113723129
Spliceosome [BR:
carb03041
]
Complex A
U1 snRNP components
U1 related factors
113723129
Complex B
113723129
Ribosome biogenesis [BR:
carb03009
]
Eukaryotic type
Pre-60S particles
Helicases
113723129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
113723129
NCBI-ProteinID:
XP_071915908
UniProt:
A0ABM4V8N6
LinkDB
All DBs
Position
7e:complement(2526732..2532519)
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AA seq
779 aa
AA seq
DB search
MAATATVSAGIRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVSSSHVGSAP
LHKPLSSSVHVQKSSQGQRRESSPIDDDDRYSRGGNGASMKVFSGVGSSQDLRSGPYHPR
DVANVTVGTGGVKGYSSSSAGTGLSGEAYRHRHEISVTGDNVPPPLTLFDSTGFPSEILR
EVYNAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLIPGFIHLKRRHNNPQLGP
TVLVLSPTRELATQIQDEAIKFGKSSRISCTCLYGGAPKGPQLKEIDRGVDVVVATPGRL
NDILEMRRVSLDQVSYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPKEVRK
IAADLLVNPVQVNIGNVDELVANKSITQHVELLSSMEKHRRLEQILRSQELGSKVIIFCS
TKKMCDQLARNLTRQFGAAAIHGDKSQSERDFVLSQFRNGRSPILVATDVAARGLDIKDI
RVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFGDQDAKYASDLVKVLEGANQRVPVE
IRDMALRGGGMGRSRRWGSGPGGRDGGRGGRYDSDYSSRDGRGSWANSSERGGGPGCDRD
SRDSERYGRNSRDVEASGSFHYRSFHEKMTQKHSRSKSRSRSRSPIRGSGWGDNRSKGRS
RSRSADRFDQAPPVRSFHEAMMQRARSPPKFGDLDFPSFNGSKSKEDSDNHWGRLQSPSH
GSERENVGGSCEQQWGHSPVKRQDNQSNLHFGEEEEEGMIQAEEALAPHDEDGLFPRNK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggcggctactgctactgtctctgcaggcatacggtatgcaccagaggaccctaccctc
cccaaaccttggagaggcctagttgatggtaagactggatatctgtacttttggaatccg
gagaccaatgttacgcaatatgagaggcctgtttcctcttcgcatgtgggatctgctccg
ctgcataaacctcttagttcatctgttcatgttcaaaaatcttctcaaggacaacgccgt
gagagtagtcccatagatgatgatgatagatacagcagaggcggtaatggtgcttcaatg
aaggttttctctggagttggaagttctcaggatctgcgtagtggaccatatcatcctcgt
gatgttgcaaatgtaacagtgggcactggtggtgtgaagggatactcatcatcaagtgca
ggaactggcttatctggagaggcctatcgtcatcggcatgaaataagtgtaacaggagac
aatgtgcccccacctttgacattatttgattccactggttttccatctgagattctgaga
gaggtatacaatgctgggttctctgcccctactccaatacaggcacaatcatggccaatt
gctcttcaaggtcgcgatattgtagcaattgccaagacaggctctgggaaaacgttgggt
tatctgattcctggttttattcatctaaagcgcagacacaacaatcctcagttgggtcct
actgttttggtgctgtcaccaacaagggaattggcgactcaaatacaagatgaagctata
aaatttggaaaatcatcgaggatatcttgcacgtgcttgtatggaggtgctccgaaagga
cctcaactaaaggagatagataggggtgtggacgtcgttgtggctactcctggccgattg
aatgatattctggagatgagaagagttagcctggatcaagtctcatatttggtactagat
gaggctgaccgcatgttggacatgggatttgagcctcagataaggaaaattgtgaaggag
gtgccaactcgaaggcagaccttgatgtacactgccacttggcctaaggaggttcggaaa
attgctgctgatctccttgttaacccagttcaggtgaacattgggaatgttgatgagctc
gtagctaacaagtctatcacccagcatgttgagctcttatcatcaatggagaaacaccga
cggttggagcagatattgcgatctcaagaactgggatcaaaggtaatcattttttgttca
actaagaagatgtgtgatcaacttgcacgcaacctaacccgccagtttggagctgctgct
attcatggggacaaatcccagagcgagagggattttgtcttgagccagtttcggaatggt
agatctccaatccttgtagccactgatgttgctgctcgtggcctagatattaaagatatc
agggtggtgataaactatgacttccccactggaattgaggactatgttcatagaattgga
aggactggaagggcaggtgccactggggtggcgtacacattttttggtgaccaggatgct
aagtatgcttctgatcttgtcaaagttctggaaggtgccaaccaacgtgttcctgtcgaa
atccgtgatatggctttacgtggtggtggaatgggaaggtctaggcgttggggatctgga
cctggtggacgtgatggtggtcgaggtggccgttatgattctgattacagtagcagagac
ggacgaggcagttgggcaaactcatctgaaagaggaggtggacctggttgtgaccgagac
tcccgtgacagtgagaggtatggtcgcaattcccgcgatgttgaagcctcaggaagcttc
cattaccgaagctttcatgaaaaaatgactcagaagcatagtcgaagtaaaagtcgtagt
cggagtagaagccccatccgtggatctggttggggtgacaaccgaagcaagggccgaagt
cgtagccgcagtgctgacaggtttgatcaggctccaccagtacgtagttttcatgaagct
atgatgcaacgggcccgttcacctccaaaatttggtgatcttgatttcccgtctttcaat
ggaagtaaatcaaaagaagattcagacaatcattgggggagattgcagtctccatcccat
ggttctgagagggagaacgttggaggttcatgtgagcagcaatgggggcattcaccagtt
aagcggcaggataatcaatcaaatttgcattttggggaggaagaagaggaaggaatgatt
caagctgaagaagctttggcgcctcacgatgaagacgggctgtttcccaggaacaaataa
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