Coffea arabica (coffee): 113724019
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Entry
113724019 CDS
T11342
Name
(RefSeq) transcription initiation factor TFIID subunit 1-like
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
carb Coffea arabica (coffee)
Pathway
carb03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113724019
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
carb01001
]
113724019
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113724019
03036 Chromosome and associated proteins [BR:
carb03036
]
113724019
Enzymes [BR:
carb01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
113724019
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
113724019
Protein kinases [BR:
carb01001
]
Serine/threonine kinases: Other
TAF1 family
113724019
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
113724019
Chromosome and associated proteins [BR:
carb03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
113724019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
ubiquitin
TBP-binding
Rad60-SLD
zf-CCHC_6
Ubiquitin_5
Motif
Other DBs
NCBI-GeneID:
113724019
NCBI-ProteinID:
XP_071932909
UniProt:
A0ABM4WM95
LinkDB
All DBs
Position
2c:19253001..19276224
Genome browser
AA seq
1964 aa
AA seq
DB search
MVYEAGGTSHDGPDDRDDDDEDEFEDGGGGNHLLGFMFGNVDNSGDLDVDYLDEEAKEHL
GALADKLGPSLTDIDLSVKTPQTPSDAAEQDYDKKAEDAVDYEDIEEQYEGPEVQAATEE
DFLLPRKDYFSKEISMSTLGNINSVFDDENYDEDDESEKKDEVAESNIEVKSILSAGEKI
DEDASSGDAFEDALESEFLTADIVDSEEEVPVGLEEPSGGNDSTLLPILCVEDGLVILRF
SEIFGLYEPLKKSDKRERKYPVPRDKFKTMDTPENVEEDEETFLKGSGLDVSGTRQAQVA
QHNVLTFMDDDLGSGKFGVIQEDGKIDAEVDQCRKDSCQSSEPFKEDLPVMLPPEWNSPI
CPKFYPLDQLNWEDRIIWDNSPAQSSCIEESCEMSGPDSDVLGDKNFEADTHPLVSDLER
ERCEHEHPFRHGFSISPEPFGSGSLSEPSKLPYCERMYHPQLLRLESRFDQDDPNNTDLG
HEGGSEKVLGNGVISRFNRLMLENGDLQEGSWLDNIIWDSNQPISKPKLILDFRDEQMLF
EIQDNKDSKHLRLHAGAMIITRSVKPSTGDSVELHSHGGLSGGRFNISNDKFYSNRKSSQ
QVKSHMKKRTAHGLKVLHSIPTLKLQTMKVKLSNKDIANFHRPKALWYPHDNEVALKEQE
KLSTQGPMKVILKSLGGKGCKLHVDGEETISSVKAKASKKLDFKLSEPVKVVYSGKELED
HKTLAAQNVRPNSLLHLVRTKIHLLPRAQKIPGENKSLRPPGAFKKKSDLSVKDGHVFLM
EYCEERPLLLGNVGMGARLCTYYQKSAPGDQTGNLMRNGNNGLGSVLILDPADKSPFLGD
IKPGCSQSSLETNMYRAPIYQHKVSSADFLLVRTAKGKLSIRRIDRIDVVGQQEPHIEVM
SPGSKSVQTYIMNRLMVYMYREFSAAEKRGLRPSIRADELSAQFPSLSEAFLRKRLKHCA
DLQRGSNGQLLWAMRRNFRIPLEEELRRMVTPENVCAYESMQAGLYRLKRLGITRLTSPT
GLSSAMNQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPS
GRGLGFSFVRNTPKAPVSNTMVKKKAVVGKGSTVTGTDADLRRLSMEAAREVLLKFNVPE
EQIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFMQLQQQTREKCQEIW
DRQVQSLSAVEGEENESDSEANSDLDSFAGDLENLLDAEECEDGEDGNNVSKNDIIDGVK
GIKMRRRPFQAQAEEEIEDEAAEAAELCRMLMDDDEADRKKKKKVKVGGDQVRLGSVSQL
KLGVENVERIQKTNNVIKRNIQLDGQPLAKENATRDRKELQVFFTDVNIEPQTFPFLIDK
VDSADDEADRKKKKKVKVGGDQVRLGSVSQLKLGVENVERIQKTNNVIKRNIQLDGQPLA
KENATRDRKEDENISAKKNLSGKLKAKKKNDIEQMELLKKKVKILGDGIKIVKEKKSARE
SFVCGACGQLGHMRTNKNCPKYGEDVETRAENNELEKNLGKVGILDQADQPQQKTSTKKL
IQKSATKIAVVEAHEDDKSSTKAKILKVKCGTTDKPPDKLTPATSQNSDKPVTSDAETVH
KSAVKVNKIIFSNKTKPDDMLVESQKPSIVIRPPTESDRDQPRKKIIIKRPKEVINVDDV
SQEGSSGIEYRKTKKIVELTSVDKHRVREIKYFTDQAASKKNREEKRWLEEEEKRRFAIR
QKEERARRYLEEQKRAMEERDRFSEIRRYEETIRREREEEEREKAKKKKKKKKRPEIRDD
YLDDFPPRRNDRRIPDRTAKRKPGPDTGRYSAGYGPATKRRRGGEVGLSNILESIVETLK
EKQEISYLFLKPVSKKDAPDYLDIIKRPMDLSTIREKVRRMEYKRSEEFRHDIWQITFNA
HAYNDRRNPGIPPLADQLLELCDYLLDLNDADLREAEAGIEHGD
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
atggtatatgaggctggtggcacatcccatgacggccctgatgaccgtgatgatgatgat
gaggacgaatttgaggatggtggtgggggcaaccatcttttgggtttcatgtttggaaat
gttgacaactccggtgatcttgatgttgactaccttgatgaggaggcaaaggagcatctt
ggagctctggcagacaagcttggtccatccctgacagatatagatttgtcagtgaaaaca
ccacaaacaccttctgatgctgctgaacaagactatgataaaaaggcagaagatgctgtt
gattatgaagatattgaggagcaatatgaagggccggaggtccaagcagctacagaagag
gattttttgttgccaagaaaggactatttttctaaagaaatatcaatgagtactttgggg
aatatcaattctgtctttgatgatgaaaattatgacgaggatgatgaatcagaaaagaag
gacgaggtggccgaaagcaatattgaagtgaaatccatactttcagcaggggaaaagatt
gatgaagatgcttcatctggggatgcatttgaagatgcgcttgaatctgaattcttgacc
gctgatattgtagattctgaggaggaggtgccagtgggcttagaggagccatctgggggc
aacgattcaactctgctgcctattctttgtgttgaagatggattggtgattctacgtttt
tcagaaatttttggcctttatgagcctttaaagaagtctgacaaaagggagcgcaaatat
cctgttcctagagataaattcaagactatggatactccagaaaatgttgaagaagatgag
gaaacattcttgaagggatccggcttagatgtgtctggtacgagacaagcccaagtggct
caacacaatgttttaacatttatggacgatgatttaggatcggggaagtttggtgttatc
caggaagatggtaaaattgatgcagaagttgaccagtgtagaaaagattcttgtcagagt
tctgaaccatttaaagaagatttgccagtgatgcttcctccagagtggaactcacctatt
tgtccaaagttttaccctcttgatcaactaaactgggaggataggataatttgggataat
tctcccgcacagagttcctgtattgaagagagttgtgagatgtctggacctgattctgac
gtactgggtgataagaatttcgaggccgatactcaccctctggtgtcagatcttgaaaga
gaacgttgtgaacatgaacatccttttcgtcatggtttttccatatcaccagagcccttt
ggttcaggaagtctttctgaaccttcaaaactgccttactgtgaaagaatgtatcatcct
caacttttaaggttagagtctcgatttgatcaagatgatccaaataatactgaccttgga
catgaaggaggctctgaaaaagttctaggtaatggtgtcataagccgttttaataggctc
atgttagagaacggagatctgcaggaaggatcttggttggacaatataatttgggattca
aatcagcccatttcaaagccgaagctgatattagatttccgagatgaacaaatgcttttt
gaaattcaagataataaggacagtaagcatcttaggcttcatgctggtgctatgattata
acccgttcagtcaagcctagtactggtgactctgtcgagctacatagtcatggaggtctt
tcaggaggtaggtttaacatctcaaatgacaaattttactcaaataggaaatcttcccag
caggtgaaatcacatatgaagaagcgtacagctcatggtctcaaagttctgcattcaatt
ccaacacttaagctgcagacgatgaaagttaagctaagcaataaagatattgctaatttc
catcgaccaaaagctttatggtatcctcatgataatgaggtggcactgaaagaacaagag
aagctgtctacgcaaggacctatgaaggtcatattaaagagtttgggaggcaaaggatgt
aaacttcatgtggatggcgaggagaccatctcttcagttaaagctaaagcttcaaagaag
ctagattttaaattgtctgagccagtgaaagtggtttattctggaaaggagctagaagac
cacaagactcttgctgcacaaaatgtgcgaccaaactccttgttgcaccttgttcgtaca
aaaatccatttactacccagggcacaaaaaatccctggtgagaacaagtctttgcgtcct
cctggggcatttaagaagaagtccgatctttcagtaaaggatggtcatgtctttctgatg
gaatactgtgaagaaagacctttactcctgggaaatgtgggaatgggtgcaagactgtgc
acttactaccaaaagtctgcccctggtgatcaaacagggaacttaatgcgaaatgggaat
aacggattggggagtgttttaatcctagatcctgctgataaatccccttttcttggggac
ataaaacctggttgcagtcaatcatctctcgaaaccaatatgtatcgagcacctatatat
cagcataaggtgtcatcagctgattttctattggtccgaactgcaaaaggaaaactttca
ataagacgaattgacaggattgatgttgttggacaacaggagcctcacatcgaggtaatg
tcccctggatcaaaaagtgttcaaacatacattatgaacaggttgatggtgtatatgtac
cgtgagttttctgctgctgagaagcgtgggttacggccttctatacgcgctgatgagttg
tctgcacagtttcccagcctatcagaagcatttcttcggaaaaggctaaaacattgtgct
gatttgcagagaggatcaaatggacagcttctttgggctatgaggcgcaatttccgcatt
cctttggaggaggaactaaggaggatggtgacaccagagaatgtttgtgcctatgaaagc
atgcaagctggcttgtacaggctcaagcggttgggaattactaggttaacttcaccaaca
ggcctgtcatctgcaatgaatcagcttccagatgaagctattgcgttagctgctgcatct
catattgaaagggagctgcaaataacaccatggaacttgagtagcaactttgttgcctgc
acaaatcaggacagggaaaatattgaacgtttggaaattacaggtgttggtgatccatct
ggacgtgggctaggtttcagttttgttcgtaatactcctaaggcacctgtatcaaataca
atggtgaagaaaaaggcagttgttggtaaaggttcaacagtaaccggtaccgatgccgat
ctacgcagattgagcatggaagctgcacgagaggttctcctcaaattcaatgtaccagag
gagcaaatagctaagcagactaggtggcatcgaattgctatgattcggaagctttcaagt
gagcaagctgcatcaggggtcaaggtagatccaacaacaatcagcaagtatgctcgtggc
caaagaatgtcgtttatgcagctgcagcagcagacgagagaaaaatgtcaggaaatatgg
gatcgacaagttcaaagtctttctgctgttgagggtgaagaaaatgaaagtgactctgaa
gccaacagtgacctagattcctttgctggggatttggaaaatcttctggatgcagaagag
tgtgaagatggtgaagatggtaataatgtttccaagaatgatatcattgatggggttaag
gggattaagatgagaaggcgacctttccaagcacaggcagaggaggaaattgaagatgag
gctgctgaagcagctgagttgtgcagaatgcttatggatgatgatgaagctgatagaaag
aagaagaaaaaagttaaagttggaggggaccaagttcggttgggttcagtctcgcaattg
aagcttggtgttgagaatgttgagcgaatacagaaaacgaacaatgttatcaagagaaac
atacaactagatggacaacctctagcaaaggagaatgccactagagatcgtaaagagtta
caagtctttttcactgatgtaaatattgaaccacaaactttcccatttctgattgataaa
gttgattctgcagatgatgaagctgatagaaagaagaagaaaaaagttaaagttggaggg
gaccaagttcggttgggttcagtctcgcaattgaagcttggtgttgagaatgttgagcga
atacagaaaacgaacaatgttatcaagagaaacatacaactagatggacaacctctagca
aaggagaatgccactagagatcgtaaagaggacgagaatatttcagctaaaaagaactta
tccgggaaacttaaagcaaagaagaagaatgacattgaacagatggagcttctaaaaaag
aaagttaaaatattgggtgatggaattaagattgtcaaggaaaagaaatcagcaagagag
agttttgtctgtggggcttgtggtcagcttggtcatatgaggactaataaaaattgcccc
aaatatggtgaagatgttgaaacacgtgctgaaaacaacgagctggagaagaacttaggg
aaagttggtattctggatcaggcagatcaaccccagcagaaaacttctacaaagaagctc
atacagaaaagtgcaaccaaaattgctgtggttgaagcccacgaggatgacaagtctagt
acaaaggcaaaaattctgaaggtcaaatgtggcacaactgacaaaccccccgataagctc
actcctgccacatcacagaattctgacaaacctgtaacttcagatgctgaaacagtacat
aaatctgctgtcaaagtaaacaaaattattttttcaaacaaaactaaaccggacgatatg
ctggttgagtctcaaaagccttccattgttataaggccaccaacagagtctgatagagac
cagcctcgcaagaaaatcataatcaaacggccaaaggaggttataaatgtggatgacgta
agtcaggaaggaagtagtggaattgagtaccggaaaacaaaaaaaattgttgaattgacg
agtgttgataagcatagggtgcgagaaatcaaatatttcactgaccaagcagcaagcaag
aagaacagagaggagaagagatggttggaagaggaggagaagaggaggtttgctatcaga
caaaaagaagaaagagcccgaaggtatttggaggaacagaaaagggcaatggaagagcgg
gatagattttccgagataagacgatatgaagaaaccatccgcagggagagagaagaagaa
gaacgtgaaaaggcaaaaaagaagaagaaaaagaagaaaagacctgaaattagagatgat
tacctggatgattttcctcccagaagaaatgacaggaggataccagacagaacagcaaag
aggaaaccaggacctgataccggaagatacagtgctggctatggcccagcaacaaagcgc
agacgagggggagaggttggcttgtcaaacatcctggaaagcattgtggagactctcaag
gagaagcaagagatttcctatctttttttaaagccagtttccaagaaggacgctcctgac
taccttgatatcataaagcgaccgatggatctgtccacaatccgtgaaaaggtgaggagg
atggagtataaaagaagcgaagaatttaggcatgacatatggcaaatcaccttcaatgcc
catgcgtacaatgatagacgcaacccaggtattcctccattggctgatcagcttctggag
ctttgtgactatttattagatttgaatgatgctgacttaagggaagctgaagctggtatt
gaacatggagattga
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integrated database retrieval system
