Coffea arabica (coffee): 113724395
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Entry
113724395 CDS
T11342
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
carb Coffea arabica (coffee)
Pathway
carb03013
Nucleocytoplasmic transport
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113724395
09122 Translation
03013 Nucleocytoplasmic transport
113724395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113724395
03041 Spliceosome [BR:
carb03041
]
113724395
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
113724395
Spliceosome [BR:
carb03041
]
Complex C
Other components
EJC/TREX
113724395
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113724395
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
CENP-X
Motif
Other DBs
NCBI-GeneID:
113724395
NCBI-ProteinID:
XP_071932067
UniProt:
A0ABM4WJV8
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Position
2c
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AA seq
607 aa
AA seq
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MDLFRNAIVNPGPPEDFALQTVQEAIKPQKQTKLAQDENQLLENILRTLLQELVSAAVQS
GEKVMQYGQSVAEGENSPGQIPRLLDIVLYLCEKEHIEGGMIFQLLEDLTEMSTMRNCED
IFGYIESKQEILGKPELFARGKLVMLRTCNQLLRRLSKANDVVFCGRIIMFLAHFFPLSE
RSAVNIKGVFNTSNETKYETEAPDGISIDLNFYKTLWSLQEYFSNPASLSVTPSKWHKFN
SSLMTVLSTFEAQPLSDDEGNAINLEDEAANFSIKYLTSPKLMGLELKDPNFRRHILVQC
LILFDYLKAPGKNDKDLPSETMKEEIKNCEERVKKLLDMTPPRGKEFLKSIEHILERERN
WVWWKRDGCPPFEKQPLEKKLTQDGVKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRV
RTPAISEYWKPLAEDMDESAGIEAEYHHKNNRVYCWKGLRFSARQDLEGFSRFTEHGIEG
VVPLELLPPDVRSKYQAKPNDRSKRAKKEETKSTIQPEENQIAATDINVEGSKANLETSA
APLDTDDTIATASTSQGGTPDEIQKQSSETDGGHDVRVEADADGEADAETGMIDGETDAE
ADLEAVS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggatttattcaggaatgcgatagtgaatcctggcccgcctgaagattttgcccttcag
acagtgcaagaagctataaaacctcagaagcaaacaaaattagctcaagatgagaatcaa
ttgctggaaaacattttgcgcacgctactgcaggaattagtgtcagctgcagttcagtca
ggggagaaagtcatgcagtatgggcaatctgttgctgaaggggaaaatagtcctggacaa
attccacgccttcttgacattgtcctttatctttgtgagaaagaacatattgaaggcggc
atgatttttcagctattggaagatttgaccgaaatgtccactatgagaaattgtgaagac
atcttcgggtacatagagagcaaacaagaaatattagggaagccagaattgtttgctcga
ggaaagcttgttatgttaagaacatgcaatcagcttctccggcgactgtcaaaggcaaat
gatgtggtgttctgtggacgaataattatgtttcttgctcatttctttccattgtctgaa
cgttctgctgttaatatcaaaggagtatttaatacatcaaatgagacaaagtatgagaca
gaggcccctgatggtatttctattgatctgaatttctataaaacactctggagtttacag
gaatacttttccaatccagcttccctgtctgtaacaccatccaaatggcacaagtttaac
tctagtttaatgactgtgttgagcacctttgaggctcagcctttgagtgacgatgagggc
aatgccattaaccttgaggatgaggcagcaaatttcagcataaaatatctgacaagccct
aaacttatgggtctagaactaaaggatccaaattttcgacgtcacattttggttcaatgc
ctcattttgtttgattatttgaaggcaccaggaaaaaatgataaagatttgccctctgaa
acaatgaaagaagaaattaaaaactgtgaagaaagggtcaaaaagctccttgacatgact
ccacctagaggcaaagaatttctcaaaagtattgagcatatattagaacgtgaaaggaac
tgggtatggtggaaacgtgatggctgcccgccatttgagaagcaaccactagaaaagaaa
ctaactcaagatggtgtgaaaaaacgtcgtccacggtggagattaggaaacaaagaactt
tctcaattgtggaaatgggcagaccagaatccgaatgctttaactgatcctcaacgtgtg
cggactcctgccatcagcgagtactggaaacccctggctgaggatatggatgaatctgct
ggaattgaagcggaatatcatcacaagaacaatcgagtttactgttggaaagggctacgg
ttctctgctcgtcaagacctggagggattttctagatttactgaacatggaattgagggt
gtggtacccttggaactgctgccacctgatgtgaggtccaaatatcaagctaaaccgaat
gacaggtccaagcgtgcaaaaaaggaagaaacgaaaagcaccattcaacctgaagaaaat
cagattgcagcaaccgatatcaatgttgaaggaagcaaagccaatcttgaaacatcagca
gctccactagatacagatgacaccattgcaacagctagtacttctcagggtggaacgcct
gatgagattcagaagcaaagctcagagactgatggtggtcatgatgtacgggtggaagca
gatgcagatggtgaagcggatgcagaaacagggatgatagatggagagacagatgcagag
gctgatttagaagcagttagctaa
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