Coffea arabica (coffee): 113724506
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Entry
113724506 CDS
T11342
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
carb Coffea arabica (coffee)
Pathway
carb03022
Basal transcription factors
carb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113724506
09124 Replication and repair
03420 Nucleotide excision repair
113724506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carb03021
]
113724506
03400 DNA repair and recombination proteins [BR:
carb03400
]
113724506
Transcription machinery [BR:
carb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113724506
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113724506
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
113724506
NCBI-ProteinID:
XP_071929475
UniProt:
A0ABM4WCG2
LinkDB
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Position
1c:45774505..45785221
Genome browser
AA seq
454 aa
AA seq
DB search
MPQVKIVAKNFMDMVASLPAMKLDKLYQNAFICQAILRSMPPLAKRYVLQLLFIDAPVTG
KMLEESVLADGLSKHKVAIDRLVQLRVLTEALDRKKEATYRMNPTFQINVQKLIVHGGVL
PREPMPSTAGFRLPSLEELDAYAVQQWECFLLHLISSSEAEKATTNISSSMMKVFQRGLL
SQKDDKEPPRLTEGGFQFLLMDTNAQLWYIIREYIGNSEERGLDSADLVSFLLELSFHAT
GEAYNINTLSDIQRAIIRDLADLGLVRLQQGRKESWFIPTKLATNLSISLSDTSSRKQGY
VVVETNFRMYAYSSSKLHCEILRLFARVEYQLPNLIVGAITKESLYKAFQNGITAEQIIS
FLQQNAHPRVAERIPTVPENVTDQIRLWESDLNRVECIPAHFFEEFPSREVFEAACDHAR
ECGGFLWENSKKMWLVVKAESFAYMKEFLRGKKQ
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagtgaaaatcgtcgcgaagaattttatggacatggtggcttcattgcctgca
atgaagcttgacaaactttatcagaatgcctttatttgtcaagctatccttagatcaatg
ccgccattggcaaagaggtatgttctacaattgctgttcatagatgcgcctgtgactggt
aaaatgttggaagagtctgtgcttgcggatgggttgtcaaagcacaaagtagctattgat
agattagttcagctgagagtattgactgaagctcttgaccggaaaaaagaagctacttac
agaatgaaccctacatttcagataaatgttcaaaagcttattgtgcatggtggagttttg
ccaagagagcctatgccatcaactgctggtttcaggctgcctagcctggaggagttggat
gcctacgcagttcagcaatgggagtgttttttgctgcatctgataagctccagtgaagct
gaaaaggcaacaacaaatatcagctcttccatgatgaaagtttttcaacgtggccttttg
agtcagaaagatgacaaagaacctccaagattgactgaaggtggttttcaattcttgctg
atggatacaaatgcacaattgtggtatatcatcagggaatatatcggcaactctgaggag
cgaggcctggactcagcggatcttgtatcctttcttctggaactaagcttccatgctact
ggagaggcttataatataaacacattgagtgatatacagagggctataattagggatctt
gctgatttgggccttgtgaggcttcagcagggaagaaaggagagttggtttatccccaca
aagttggctacaaatctatctatcagcttatcagatacatcatccaggaaacaggggtat
gttgttgtagagacaaatttcaggatgtatgcatattcatcttccaaattgcactgtgaa
atcttacgtctatttgcaagggttgaataccagcttcctaacttgattgttggagcaatt
acaaaagagagtctatataaagcttttcaaaatggtataactgcagaacaaattatttct
tttcttcaacagaatgcacatcctcgagttgcagagagaatacctactgtgcctgagaat
gtcactgatcagataaggttgtgggaatcagatttgaatagggtggagtgtatacctgca
catttctttgaagagttcccctctagggaagtgttcgaggctgcatgcgatcatgcaaga
gaatgtggtggtttcctctgggaaaattctaaaaaaatgtggcttgtagtgaaagcagaa
agttttgcctacatgaaggagtttcttcgtggaaagaagcaatag
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