Coffea arabica (coffee): 113724780
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Entry
113724780 CDS
T11342
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
carb Coffea arabica (coffee)
Pathway
carb04120
Ubiquitin mediated proteolysis
carb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
113724780
04120 Ubiquitin mediated proteolysis
113724780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
carb04121
]
113724780
Enzymes [BR:
carb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113724780
Ubiquitin system [BR:
carb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113724780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
FlxA
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_Vps41
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
113724780
NCBI-ProteinID:
XP_027103459
UniProt:
A0A6P6VK69
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Position
2c:277201..282199
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AA seq
532 aa
AA seq
DB search
MLRLQTYAGLSIIATLAVIYHAFSSRGQFYPAMVHLSTSKISLVLLLNMGLVIMCILWQL
TKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLA
QKRVEYIETTPTVPAWSHLRIVSFMAFLLLVDTLFLYNSVKYLILTRQASVSLFFSFEYM
ILATTTVSTFIKYVFYVSDMLMEGQWEGKAVYTFYLELIRDLLHLSMYLCFFLVIFVNYG
VPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTITAGSRPDSHQQGTNMAGTS
SHASASNDMANGNINQHQARLQAAAAAASIYGKSFVYPSASTPMWSQIYRSMGSIPADSG
GEVDVTEQSQLRHFNNFPFAQLPPFTFAATSLNGERIHSNLSVSESQIDAQKKFLEHQIE
VLQAQLQLIQKLYAEKTNATEATCASKGKTISSLSSSSSDCNQHVKTEDSDS
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgctgaggctgcagacttacgctgggctcagtataattgcaacccttgctgtaatttat
catgcctttagcagtagaggtcaattctatccagccatggttcatttatccacctccaag
atcagcttggtacttctcctcaacatgggcctcgtcattatgtgcattctctggcagttg
accaagaaaatcttccttggttccctccgcgaagctgaggttgagaggttgaatgagcag
tcctggcgtgaagtcatggaaatactctttgccatcactattttccgccaggacttttcc
gtcagttttcttgccatggttactacacttctcttgatcaaagctttgcattggttggcg
cagaaaagggttgagtacattgagaccactccaactgtccctgcctggtcccatctccgc
atcgtctcctttatggcattcctactccttgtcgacaccctcttcttgtacaactctgta
aagtatttgatactgacaagacaggcttcagtttctctcttcttttctttcgagtacatg
atactagctacaaccaccgtctcaacttttatcaaatatgtattttatgtcagcgacatg
cttatggaaggacaatgggaaggcaaggctgtctacaccttctatttggagctaatccga
gatctgctacacttgtctatgtacctgtgcttttttcttgtaatcttcgtgaactatggt
gttcctctacacttgattcgggagctttatgagacctttcgcaacttcaaagttcgagtt
gccgattatattcggtatcggaagatcacttcaaatatgaacgatcgttttccagacgca
acaccggaagagcttaatgcaagtgatgcaacctgcattatttgccgtgaggagatgact
acagcaaagaaactcctttgcgggcatcttttccatgtacattgtcttcgttcatggttg
gaaaggcagcacacatgtcctacttgcagagcacttgttgtaccacctgaaaatgggaca
attacagctggatcgcggcctgatagtcatcaacagggaacaaacatggctggtacatct
tctcatgcatctgctagtaatgacatggcaaatggtaatatcaaccaacaccaggctaga
ctccaagctgcagcagctgctgcctcaatatatggaaaatcttttgtttacccttctgca
agcacaccaatgtggtctcaaatatacaggtccatgggctccattcctgctgattcaggc
ggtgaagtagatgtcactgaacagtcacaactgcgccacttcaataactttccctttgcc
caactcccaccatttacgtttgctgcaacaagtttgaatggagagagaattcacagcaac
ttaagtgtatcagagtctcaaattgatgctcaaaagaaatttctggagcaccagattgag
gttttgcaagcccagctccagcttatacagaagctatatgctgagaaaaccaatgctaca
gaagcaacttgtgccagcaagggaaagaccatatcgtcattgtcttcctcttcttcagat
tgcaatcagcatgtgaagactgaagattcagattcatag
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