KEGG   Coffea arabica (coffee): 113724818
Entry
113724818         CDS       T11342                                 
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1-like
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
carb  Coffea arabica (coffee)
Pathway
carb03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    113724818
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:carb04121]
    113724818
   03036 Chromosome and associated proteins [BR:carb03036]
    113724818
Ubiquitin system [BR:carb04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     113724818
Chromosome and associated proteins [BR:carb03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     113724818
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Gbeta Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_Aladin WDR55 Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_WDR41 Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 WD40_MABP1-WDR62_2nd MIOS_WD40 EIF3I Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 WD40_RFWD3 Beta-prop_WDR19_1st
Other DBs
NCBI-GeneID: 113724818
NCBI-ProteinID: XP_071929281
UniProt: A0A6P6W604
LinkDB
Position
2c:653000..656392
AA seq 342 aa
MDNPSSAQEPHLRSENSVSHDCPYPIYAMAVSSAASHHNRRRRNIAVGSFVEDPGNRVDI
FSFDEETTSLKPIPTLSFEHPYPPTKLMFQPPNPRSAAELLASSGDYLRIWEVRDSSIEP
LSTLNNSKTSEFCAPLTSFDWNDLEPRRIGTSSIDTTCTIWDIEKGAVETQLIAHDKEVY
DIAWGEAGVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATIL
MDSNKVVILDIRSPTMPVAELEKHQASVNAIAWAPQSSRHICSAGDDGQALIWELPTVAG
PNGIDPMSMYLAGTEVNQLQWSAALPDWIAIAFSNKLQMLRV
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggataatccatcgtcggcccaggaaccccatcttcgctctgaaaactctgtctcacat
gactgtccgtacccgatttacgccatggctgtttcttccgccgcctcccaccataaccgc
cgtcgccgcaatatagccgtcggaagcttcgtcgaggatcccggcaacagggtcgacatc
ttctccttcgacgaagaaaccacctctctcaaacccatccccaccctctccttcgagcac
ccctacccacccactaagttaatgttccaaccccccaatcccaggtccgcagccgagctc
ctcgcctcctccggcgactacctccgcatctgggaagtcagggattcctctattgaaccc
ctctccactcttaacaacagcaagaccagtgaattctgcgccccattgacctccttcgac
tggaacgacttggagccccggagaattgggacttccagcatcgacaccacttgcaccatt
tgggacatagagaagggggccgtagaaacccaattgatcgctcatgataaggaagtatac
gatattgcttggggggaagccggggtttttgcatcggtttctgctgatggctccgtcaga
attttcgatctgagggataaggagcactccactatcatatatgagagtccccagccggat
actcctctgttgaggttggcttggaacaagcaggacttgaggtacatggctaccatcttg
atggatagcaacaaagttgtcatcttggatatcaggtcacccaccatgcctgtggcagag
ttggagaagcatcaagccagtgtcaatgcaattgcttgggctccccagagttccaggcac
atttgttctgctggggatgatggacaggcgcttatctgggagttgcctactgttgcaggc
cctaatgggatcgatcccatgtccatgtacttggctggaacggaggttaaccaactgcag
tggtctgctgccctgcccgactggattgctattgcattctctaataagttgcagatgctc
agagtttga

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