KEGG   Coffea arabica (coffee): 113724879
Entry
113724879         CDS       T11342                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
carb  Coffea arabica (coffee)
Pathway
carb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    113724879
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:carb03021]
    113724879
Enzymes [BR:carb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     113724879
Transcription machinery [BR:carb03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     113724879
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 DUF6815
Other DBs
NCBI-GeneID: 113724879
NCBI-ProteinID: XP_071929970
UniProt: A0ABM4WDU9
LinkDB
Position
1c:46523069..46531716
AA seq 1213 aa
MDVPDARKDPGIGSSKDKLSDETLLMDIDDIDFDDFDDMLNSVTLQELGEDFLKKFCKKA
ATAFFEQYGLISHQINSYNNFVKYGIQEMFDSVGEIVVEPGFDPSKRGDGEWKYASIKFG
KVILDKPDFWTGDKFFGDGGKEYLKFLPRHARLQSMTYSARIKVETHVQVYTKKLLASDK
AKTGRAVHIENECEKEEKREVIIGRLPVMVRSDLCWMNGVEKDDCEFDHGGYFIIKGAEK
TFVAQEQICLTRLWLSSVPCWTVSYRPVARRKRVYLKLVDESKFANLIGGQRVLSVYFVI
AEMPVWILFFALGASSDREVVDLIDLNIEDTKIANILTGSIYYADTKFEDADLKCKGGFR
KGRNALDYVQMLLNNCKYPPAESVEECISNLLFPNLTGFKQKACFLGYMVKCLLEAYTGR
RKVDNRDDFRNKRLELASELLERELKVHLKHVERRMVKAMQRDLYGDRSLQSIEHYLDAS
IISNGLSRAFSTGGWSHPYKKTERVSGVVASLRRTNPLQMTADLRKTRQQVSYIGKVGDA
RYPHCSHWGKICFLSTPDGENCGLVKNLASLGLVSTKVLEPLIERLLDCGLKQLVDHTSS
LVHGEHKIFLDGDWIGTCKDSAFFVAELRSKRRNKEIPPQVEIKRDEHHGEIRIFSDAGR
VLRPLLVVENLKKIKDLKGENYSFQSLLDKGIIELIGPEEEEDCPTAWAIDYLYTGNREN
PSMKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPSIRVDTN
IHQLYYPQRPLFCTMLSDCLWKPAYPRHRGMLPRPEYYNGQCAIVAVNVHLGYNQEDSLV
MNRASLERGMFRSEHIRSYKSDIDEKHNLGKKHKSEDEVKFGKMPSKIGRVDSLDDDGFP
FIGASLQTGDIVIGKYSESGADHSVKLKHTERGMVQKVVLSADDDGKNFAVVSLRQVRSP
SLGDKFSSMHGQKGVLGFLESQENFPFTAQGIVPDIVINPHAFPSRQTPGQLLEAALAKG
IALGGVQKFATPFSALSVDAVTDQLHRLGFSRWGNERVYSGRTGEMIHSMIFMGPTFYQR
LIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIRFGEMERDCLIAHGAASNLHERLFTL
SDSSEMHVCRKCKSMANVIQRSVLGGRKIRGPFCRFCESAEDIVKVNVPYGAKLLSQELF
SLGISLKFDAELC
NT seq 3642 nt   +upstreamnt  +downstreamnt
atggatgtgcctgacgccagaaaagatccaggaattgggagcagcaaagataagttatca
gacgaaactttactgatggatattgatgacattgactttgatgatttcgatgatatgctg
aattctgtcaccctacaagaattgggtgaagattttttgaagaaattttgcaagaaggca
gcaactgccttctttgaacagtatggtctaattagtcatcagattaattcatacaacaat
tttgtcaagtatgggatccaagaaatgtttgactctgttggagagattgtggttgagcca
gggtttgacccttccaagagaggtgacggcgaatggaaatatgcctccataaagtttggc
aaggtcatccttgataagccagacttttggacaggcgacaagttctttggagatggtgga
aaagagtacctgaagtttcttcctcgtcatgctaggcttcagagcatgacttattccgct
aggataaaagtggagactcatgttcaggtttacaccaagaagcttctagcaagtgacaag
gcaaaaactggaagggcagtacatatagagaatgagtgtgagaaggaggagaagagagag
gtcataatagggaggcttcctgttatggtgagatccgacttatgttggatgaatggagtt
gaaaaggatgattgcgaatttgaccatggtggttactttattataaagggtgctgaaaag
acatttgttgcacaggagcaaatttgcttgacaagactttggctctcaagtgtcccgtgc
tggactgtttcttaccgtccggttgcaagaaggaagagagtctatctgaagctagttgat
gaatcaaaatttgcaaatctcatcggaggacaaagggttctttctgtttattttgtcatt
gccgaaatgcctgtatggatactatttttcgcccttggtgcatcttctgatagagaggtg
gtagatttgattgatctgaacattgaagacaccaagattgctaatatactaactggctcg
atttattatgctgatactaaatttgaggatgctgatcttaaatgtaaaggaggcttccgt
aaaggcaggaatgctctagactatgttcagatgcttctgaataactgcaaataccctcca
gctgagtctgtggaagaatgcatcagcaatctactgtttccaaatttaactggattcaaa
cagaaagcctgcttccttgggtatatggtgaagtgtctgttggaagcctatactgggcga
agaaaagttgacaaccgggatgacttcagaaacaagagattggagttggcttctgagcta
ctggagagggagctgaaagtacatcttaagcatgttgagaggcgcatggttaaggctatg
caaagagatctctatggagatcgtagcctgcagagcattgaacattatctggatgcatca
atcatttcaaatggtctctcaagggcattttcaactggaggatggtcacatccttataag
aagacagaaagggtttctggagttgtagcatcccttcggcgaacaaatccattgcagatg
actgctgacttgaggaaaacacggcagcaggtttcatacatcggaaaagttggtgatgct
agatatccgcactgttcacactggggaaagatatgcttcctctctactccagatggagaa
aattgtgggttggttaaaaacttggccagcttgggtcttgtcagcacaaaagtgttggaa
cctcttattgaaagattgctcgattgtggtctgaaacaattggtagatcatacttcatca
ttggtacatggagagcacaagatatttttggatggggattggattggaacatgcaaggat
tctgcattttttgtagcagaactaaggagtaagcgtcggaacaaggagatcccaccacag
gtggaaattaaaagagatgaacatcatggagaaattcgtatattttctgatgctggaagg
gttcttcgtcctctcctagtagttgagaatctgaaaaagatcaaagatttgaaaggggaa
aactattcatttcagtctcttttggacaaaggaataattgaacttattggacctgaagag
gaagaagattgtccaactgcttgggcaattgactatctgtatactggaaacagagagaac
ccttccatgaaatacacacattgtgaactggacatgtcatttttacttggtctaagctgt
ggaataataccatatgcaaaccacgatcacgcacgaagggtcctgtaccaatctgagaag
cactctcagcaggccattgggttttccaccacaaacccaagtatcagggttgatacaaat
attcatcaattgtattatccccagaggccattgttctgtacaatgctttcagattgtctg
tggaagcctgcctatcctcgtcatagaggaatgttgccacgacctgaatactataatgga
caatgtgctatagtggcagtcaatgttcaccttggttacaatcaggaggattccttggtg
atgaatcgtgcttcactagagcgtggcatgttccgctccgagcatataagaagctacaag
tcagacatagatgagaagcataacttaggaaagaagcataagtctgaggacgaggtaaag
tttggaaagatgccaagtaaaattgggcgcgttgacagccttgatgatgatggtttccca
ttcattggtgctagccttcaaactggtgatatagtcatcggtaagtattcagaatctggg
gctgatcatagtgtgaaactgaagcacactgaaagaggcatggttcagaaggttgtactg
tcagctgatgatgatggcaagaactttgctgtggtatctctgaggcaggttcgttctcca
agtctgggtgacaaattttcaagcatgcatggacagaagggtgttctgggtttcctggaa
tcccaggagaattttccgtttactgcacaagggatagttccagatattgtgattaatcca
catgcatttccttcaaggcaaactcctggacaactgttagaggctgctttggctaaggga
attgctctaggaggtgtgcagaaatttgccacacctttttctgctttatctgttgatgct
gtaacagaccaactccacaggcttggattttcaaggtggggaaatgaaagagtgtacagt
ggtcgaacaggtgaaatgattcattccatgattttcatgggtccaacgttctatcagcgc
cttattcatatggctgaagataaagtcaaatttcgaaatactggacccgtccatccactc
actcgtcagccggtggcagaccggaagcgatttggtgggataagatttggtgagatggag
cgagattgccttatagcccatggtgctgcatccaatctgcatgaacgcctcttcactctc
agcgattcctcagagatgcatgtctgtcgcaaatgcaagagtatggcaaacgtaatccaa
aggtcagtgcttggtgggcggaagattcgtggccctttttgccggttctgtgagtctgct
gaagacattgttaaggtcaatgtgccttacggcgccaagttgctcagccaggagcttttc
agcctgggcatatctctgaagtttgatgccgagttgtgttga

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