Coffea arabica (coffee): 113725336
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Entry
113725336 CDS
T11342
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
carb Coffea arabica (coffee)
Pathway
carb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113725336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carb03400
]
113725336
DNA repair and recombination proteins [BR:
carb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
113725336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
HSP33
DUF3533
Motif
Other DBs
NCBI-GeneID:
113725336
NCBI-ProteinID:
XP_071929879
UniProt:
A0ABM4WDL0
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Position
2c:4839836..4847646
Genome browser
AA seq
1277 aa
AA seq
DB search
MKRKRLDESSHPLDTYPFEAYWWGSWHAVERLRIKDGAVTMHLVDNGEVIEEMIPTSNLR
MRSRKATINDCSCILRPGLDVCVLTASSDTEDSSEDSLVWVDARIRSIERKPHGAICACH
FYVSFYIREDAALTLQKKLSKETTRVQIDQIMILQKLDSVPSENQHYRWRTSEDCSSLLK
YKLFTGKFCSDLTWLVVASVVKQAIFDVRSVEGRMVYEVLDVDCSTDSGSNSYCVNFKLD
NGILSPIIVQFVPGIGKRTGDEMHTDAPLCLYEPMDLRRSKRRFVQPDRYLGCDVPEFDV
ETPRIGGRKMCKWDYEDEECEEMPLALSIQADHKYQKHDENENRDFFCKRRSDKNIRVCG
SADKSTVSKNSESSPTREKKQSDQSQLALVPLSISSEGKSILRELDASYDENPEDHSGNI
ADLISRYLYENGSTAKGRKKKASELNFNRKEGGFMVQHLPRKTYKRSAFCIRSEWESIYN
LKPSGKKSFSAAACRELLTRCMENIDATINMEQPPIIDQWEEFKSTKFQNQKETNDKAEK
NHEEEISEIDMLWKEMELALASCYFLDDGEESHAFPTERKLSTEKGGTGCHHDYRLNEEI
GVICRLCGFVSTEIKDVSPPFWSSASGFVHKEQRAEENLEHKPNGAEGLDNFQVPASSKA
PSSEGEVEDSVWALIPDLRSKLRAHQKRAFEFLWGNIAGSLVPALMEEKSKRRGGCVISH
TPGAGKTLLIITFLVSYLKLFPGSRPLVLAPKTTLYTWYKEVIKWNIPIPVYQIHGGQTY
KGEVLRQRLRSNAGLPRNQDFMHVLDCLEKMQKWLSHPSVLLMGYTSFLTLTREGSNYAH
RKYMAQVLRQCPGILILDEGHNPRSTKSRLRKALMKVNTKLRVLLSGTLFQNNFGEYFNT
LCLARPNFVKEVLKELDPKYKRNKKGQKNRFSQENRARKMFTDKISKLIDSNIPDERLEG
LNILKNLTGGFIDVYEGGSSDNLPGLQCYTLMMKSTSLQQGILDKLQNQRPVYKGFPLEL
ELLITLGAIHPWLIRTTACSNQYFSAEELEDLERTKFDVKFGSKVRFVMSLIPKCVFRRE
KVLIFCHNIAPINLFLELFATIFHWRKGKEVLVLQGDIELFERGRVMDKFEEAGGPSKVM
LASITACAEGISLTAASRVILLDSEWNPSKSKQAIARAFRPGQDKVVYVYQLLAAGTLEE
EKYSRTTWKEWVSSMIFSEELVEDPSRWQAQKIEDELLREIVEEDRATLFHRIMKIEKAL
SVIREGEGRSVKGQLGA
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggaagagattggatgaaagcagtcatccacttgatacatatcccttcgaggca
tattggtggggttcttggcatgctgtggagcgcctaagaattaaggatggagccgttacc
atgcatttagtagataatggggaggtgatcgaggagatgattccaacgtcaaatctccga
atgaggtcaaggaaggccacaattaatgattgttcatgcatcttgagacccggccttgat
gtatgcgttctgactgcttcatccgatacagaagactcgagtgaagactcgcttgtctgg
gttgatgccagaataagatctattgaaaggaagcctcatggtgctatatgtgcttgccat
ttctatgtcagtttctatatcagggaagatgccgctcttacgttgcagaaaaaacttagt
aaagaaacaacaagggtgcaaattgatcagattatgattcttcagaaacttgactcagta
ccttctgagaatcagcactaccgatggagaacgtcagaggattgctcttctcttctgaag
tacaaacttttcacgggaaaattctgctccgaccttacatggctggttgtcgcatccgtt
gtaaagcaagccatttttgacgtaaggtcagtagaaggtcgaatggtttatgaggtcctc
gatgttgattgcagcaccgattctggcagtaattcctattgtgtgaatttcaaattagac
aatggaatattgtcccccatcattgtccaatttgttccaggcattgggaaaagaaccgga
gacgagatgcatactgatgcaccactgtgcctttatgagcccatggacttgcgtcggtca
aagcgccgctttgtgcagcctgaccgttatttgggttgtgatgtgcccgagtttgatgtt
gaaactccaagaatagggggacgaaagatgtgcaaatgggattatgaggatgaggagtgt
gaggaaatgccacttgcactatcaattcaggctgaccacaaatatcagaagcatgatgaa
aatgaaaacagggatttcttttgcaaaagaagatcagacaagaatattcgtgtatgtgga
agtgcagacaaatcaactgtctctaaaaattccgaaagctcaccaactcgggagaagaaa
caatctgaccaatcacaacttgctttggttcccttgtcaatatcttcagagggcaaatca
attctgcgcgaactggacgcttcatatgatgaaaatcctgaagatcattctggaaatatt
gctgaccttatttccaggtatctttatgaaaatggttccaccgccaaagggcgcaaaaag
aaggcttctgagttaaacttcaacaggaaggagggtggattcatggtacaacatttaccc
agaaaaacatacaagagaagtgcattttgcatccgttctgaatgggagagtatatacaat
ttgaagccttctggaaagaaatcatttagtgctgctgcatgcagagaattgttgacgaga
tgcatggagaacattgacgcaaccatcaatatggaacagccaccaattattgatcaatgg
gaagagttcaagtcaacaaaatttcagaaccaaaaggaaactaatgacaaagctgaaaag
aatcatgaagaggaaatctctgaaattgatatgttgtggaaggaaatggaactcgccctg
gcatcttgttattttcttgatgatggtgaggaatctcatgcatttccaactgaaaggaaa
ctgtcaactgagaaaggtggaacaggatgtcaccatgattatcgactcaatgaagaaatt
ggagttatttgccggctgtgcggatttgtgagcacagaaataaaggatgtctcaccccca
ttttggtcatctgcaagtgggtttgtacataaggagcaaagggctgaagaaaatttagag
cataagcccaatggagctgaaggcctcgataattttcaagtcccagcttcctccaaggca
ccttcatcagaaggagaagtggaggacagcgtgtgggccttaattcctgatcttagaagt
aaattgcgtgcccaccaaaagcgagcttttgaatttctctggggaaacattgctggatct
ttagtaccagctcttatggaagaaaagagcaaaagaagaggtggttgtgttatttctcat
acacctggagctggcaagactttgttgattataactttccttgttagctacttgaaacta
tttccaggttctcgacctctggtgctcgctcctaagacaacactttatacatggtacaag
gaagtaattaagtggaacattcctattcccgtttaccagattcatggtggccaaacatat
aaaggtgaagttttaaggcaaagattgcgctcaaatgcaggtcttcctcgaaaccaagat
tttatgcatgtcttggattgtctggaaaagatgcagaagtggctttcccatcccagtgtc
cttctcatgggttatacctcattcctgacattgacgagagaaggttcaaattatgctcac
cggaaatatatggcccaagttctgcggcaatgtccggggattctaatacttgatgaaggg
cataacccaaggagtacgaaatcaaggctaaggaaagctttgatgaaagttaatacgaaa
ctcagagtattactttccggtaccttgtttcagaataattttggggagtatttcaacact
ctttgcttggcaagaccaaactttgtgaaagaggtgttgaaagagctggatccgaagtat
aagaggaacaaaaaaggtcaaaaaaaccgcttctcgcaggaaaatagagcaagaaaaatg
ttcactgacaaaatttcgaagctcatcgactcaaatatacctgatgaaaggttggaaggt
ttaaatattttgaagaatctgactggtggatttatagatgtgtatgaaggtgggagcagt
gacaatctccctggtttacaatgttacacattgatgatgaagtcaacctctcttcaacaa
ggaattttggacaagcttcaaaatcaaaggcctgtctacaaaggtttcccactggaacta
gagctcttaatcactcttggggcaatccatccttggttgataagaacaactgcttgttct
aatcaatatttcagtgcggaagaattggaggatcttgaaagaactaaatttgatgtcaaa
tttggttcaaaggtcagatttgttatgagtcttatacccaagtgtgtgtttagaagggaa
aaggtcttgatcttttgccataacattgctccgatcaatctgtttcttgagctatttgcc
accatttttcactggcgaaagggcaaagaggtgctagtgcttcaaggtgacatcgagctc
tttgagagagggagggtgatggataaatttgaggaggctggtggaccttcgaaggttatg
ttggcatccattacagcctgtgctgaagggattagcttaactgcagcgtcacgagtaata
ttattggattctgagtggaatccttcaaagagcaagcaagcaattgctcgggcgtttcga
ccaggtcaggacaaagttgtgtatgtgtatcagctcctggctgctggcacactggaagaa
gagaaatacagtagaactacatggaaggagtgggtttcaagtatgatatttagtgaagaa
cttgttgaggatccttctcgctggcaagcacaaaaaattgaagacgaactactgagggag
atagtggaggaagaccgagctacattatttcacaggataatgaagattgagaaggcatta
agtgtgatcagagaaggggaaggacgaagcgtgaagggacaattgggtgcatga
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integrated database retrieval system
