KEGG   Coffea arabica (coffee): 113725849
Entry
113725849         CDS       T11342                                 
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
carb  Coffea arabica (coffee)
Pathway
carb03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    113725849
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:carb03400]
    113725849
DNA repair and recombination proteins [BR:carb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     113725849
SSDB
Motif
Pfam: Tyr-DNA_phospho FHA
Other DBs
NCBI-GeneID: 113725849
NCBI-ProteinID: XP_027105045
UniProt: A0A6P6VRB3
LinkDB
Position
2c:complement(9930231..9938534)
AA seq 665 aa
MSISNSPRVGFLQPLNNNLEEEVGQEESSIPKILLSKGLNVVGRNCIPVTDKRLSRKHLS
INVASDGSSEVSVEGTNPVVLRTKGERKKLLSGEKWKIEDGDIIELIPGHYFFKYVASGG
EQNEKLMSNKQKRCWDEESSYSKDRVRNKKRINGESELEPLAEQSKKKRFENDGKETDKS
SEGVHQFNVPNSKLPSTFQLLRVQGLPAWANTNTVSINDVIQGNVILAILSNYMVDIDWL
LSACPLLKKVPNVLVIHGESDGILEYMKRKKPASWILHKPPLPISFGTHHSKAMLLVYPQ
GVRVVVHTANLIHVDWNNKSQGLWMQDFPWKANNGASKGCGFESDLIDYLTMLKWPEFNV
DLPALGSYSIKPSFFKKFDYTSAVVRLIASVPGYHSGSNLKKWGHMKLRTVLQECTFSEE
FQKSPLVYQFSSLGSLDEKWMLEFASSMSAGVTRDKKPLGVGEPLIIWPTVEDVRNSLEG
YAAGNAIPSPLKNVEKAFLKKYWAKWKANHSGRCRAMPHIKTFTRYNGQNLAWFLLTSAN
LSKAAWGALQKGNSQLMIRSYELGVLFLPSSIKPGCGFSCTDIAKSSDDNGGLQKSSETK
RMKLVTLNWQGDQTEVIQLPVPYELPPKPYSREDVPWSWDRHYAEKDVYGQVWPRQVKLY
ACQDS
NT seq 1998 nt   +upstreamnt  +downstreamnt
atgagtatatccaactctcctcgggtgggatttctgcagccattgaacaataacttagaa
gaggaagtagggcaagaagagagctcaattcccaaaatattactatctaaagggctcaat
gttgttggccggaattgcattccagtcaccgataaacgcctcagccggaagcatctcagc
attaatgttgcctccgatggctctagcgaagtctctgtggaaggaacaaaccctgttgtt
ctaagaactaagggtgaaaggaagaagcttttatctggagagaaatggaaaattgaggat
ggtgatatcatagagttgatacctggccactacttttttaagtatgtagcttctggtggt
gagcaaaatgaaaagttaatgagtaataagcagaaaaggtgttgggatgaagaaagtagt
tatagcaaagacagggttcgtaataagaagagaatcaacggtgaatctgaattggaacct
ctggctgaacaatcaaaaaagaaacggtttgagaatgatggcaaggaaacagataaatct
tcggagggtgttcatcaatttaatgttcctaattctaagttaccgtcaacttttcaatta
ttacgggtgcaagggctgccagcatgggctaatactaacacggtctcaatcaatgacgtg
attcagggaaatgttattcttgctatactttctaattacatggtggacatcgattggcta
ctttctgcatgtcctctgcttaaaaaagtgcctaatgttttggtcatccatggagagagt
gatggcatactggagtacatgaagagaaaaaagcctgcaagttggatccttcacaaacct
ccattaccaatttcatttggaacacatcattccaaagctatgcttcttgtctatcctcaa
ggagtaagggttgttgtgcatacggcaaatttgatacacgttgattggaataacaagagc
caaggcctgtggatgcaagattttccgtggaaggctaataacggtgcaagcaaaggatgt
ggttttgaaagcgatttaattgattatctgaccatgttaaagtggccagaattcaatgtt
gatttacccgctcttggcagttacagtattaagccttcattcttcaaaaagtttgattac
accagtgcagtggttaggctaattgcatcagtccctggatatcattcaggttccaattta
aaaaagtggggacatatgaagttacgtactgtgcttcaggagtgtactttcagtgaggag
ttccaaaaatctcctcttgtttaccagttttcttccctaggttctttggatgagaagtgg
atgttggaatttgcatcatctatgagtgctggagttacaagagataaaaagccccttggg
gtaggggagccattaataatatggccaacagtggaagatgtcagaaattctttagaggga
tatgcagctggaaatgccattccaagtccactaaagaatgtggagaaagcatttctgaaa
aaatattgggcaaaatggaaggctaaccatagtggtcgctgtcgtgcaatgcctcacata
aagacattcacgcggtataatggccaaaatcttgcgtggttcttgctcacttcagccaac
ctcagcaaagctgcctggggggctcttcagaaaggcaattcccagctgatgatccgttcc
tatgagcttggagtgctctttttgccttcttccattaaacccggttgtggattttcttgt
acagatattgcgaagtcctctgatgataatggtggactgcagaagagttctgaaacgaag
agaatgaagctggtgactctaaattggcaaggagaccaaactgaagtgatacagttgcct
gttccttatgagcttccaccaaaaccctattcccgggaagatgttccttggtcttgggat
cgtcattatgcagagaaggatgtttatggtcaagtatggcctagacaagtaaagttgtat
gcctgccaagattcctag

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