Coffea arabica (coffee): 113725909
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Entry
113725909 CDS
T11342
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
carb Coffea arabica (coffee)
Pathway
carb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
carb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113725909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carb03019
]
113725909
03041 Spliceosome [BR:
carb03041
]
113725909
Messenger RNA biogenesis [BR:
carb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
113725909
Spliceosome [BR:
carb03041
]
Complex B
Other components
Prp19-related factors
113725909
Complex C
113725909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_15
ARM_TT21_C
ARM_TT21
NRDE-2
Motif
Other DBs
NCBI-GeneID:
113725909
NCBI-ProteinID:
XP_071930402
UniProt:
A0ABM4WF48
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All DBs
Position
2c:complement(10708949..10714827)
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AA seq
926 aa
AA seq
DB search
MAVVAPAPSAIIPQELYPADEDLAYEEELLRNPFSLKLWWRYLIARSEAPFRKRAIIYER
ALKALPGSYKLWHAYLRERLELVRNLPITHSQYQSLNNTFERALVTMHKMPRIWIMYLES
LTNQKLVTKTRRAFDRALCALPVTQHDRIWAPYLFFVSQKGIPIETSLRVYRRYLKYDPG
HIEDFIEFLLNSELWQEAAERLAGVLNDDQFYSIKGKTKHRLWLELCDLLTQHALDISGL
NVDAIIRGGIRKFTDEVGRLWTSLADYYIRRKLVEKARDIFEEGMTTVVTVRDFSVIFDA
YSQFEESMLALKMEEMSGSELDDEEDSNETMGGEEEEEEDDRLDIRKLERKLKMFWLNDD
KDVDLRLARLEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRT
VDPMKAVGKPHTLWVAFAKLYETHKDIANARVIFDKAVQVNYKNVDHLASVWCEWAEMEL
RHKNFKGALDLMRRATAEPSVEVKRRVAADGNEPVQMKIHKSLRLWTFYVDLEESLGTLE
STRAVYERILDLRIATPQIIINYAMLLEDHKYFEDAFKVYERGVKIFKYPHAKDIWVTYL
SKFVKRYGKSKLERARELFEHAVEVAPAEVVKPLYLQYAKLEEDCGLAKRAMRVYDQATK
AVPAAEKLSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKVMCLRYAELEKSLGE
VDRARALYKHASQFADPRSDPDFWSKWHEFEVQHGNEDTFREMLRVKRSVSASYSQTHFI
LPEYLMQKDQMQTLEEAKDVLKKAGVADDQMAALEKKLLPSANDAVTKDSNRVLGFVSAG
VQSVGDGAPKDTENKEDVELPEESDSEDDDKVEIAQKDVPNAVFGGLIRKREETDNPENG
DDAAAGKDEDEGHLGALARFKRSRNA
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggcagtggtggcgccggcgccgtcggcgattataccccaggaactctacccggctgat
gaggatttagcctacgaagaagagctgctccgcaaccccttcagtttgaagctttggtgg
cgttacttgatagccagatccgaagccccatttcgaaaacgggccataatttatgagcga
gccctaaaagccctgcccggaagctacaagctatggcatgcctaccttcgcgaacggctt
gagctggttaggaaccttccaattactcattctcagtatcaatctctgaataatactttc
gaacgggcccttgttacaatgcataaaatgcctcgcatttggattatgtacttagagtct
ttaactaatcagaagctcgtgaccaaaactcgtagggcttttgatcgggcgctttgtgca
ttgcccgttactcagcatgatcgaatatgggctccttatttatttttcgttagccaaaag
gggattccgattgagacatcgcttagagtttatcgtaggtatttgaagtatgatcctggc
catattgaggattttatagagtttttgttgaattctgagctgtggcaggaggctgcagag
aggttggctggggttctgaatgatgatcagttttattcgataaagggcaagacaaaacac
aggctgtggttggagttgtgtgatttgttgactcagcacgctttggatatctctgggttg
aatgtggatgcaatcattagaggtgggattaggaagtttacggatgaggttggaaggttg
tggacatctctggctgattattatattcggaggaagttggtggagaaggcgagggatatt
tttgaggaaggcatgactacagtggtgacggttagggattttagcgtgatttttgatgct
tattcacagtttgaggagagtatgcttgctttaaagatggaggagatgagtggcagtgag
ctggatgatgaggaagatagtaatgagactatgggtggggaggaggaagaagaagaggat
gatcgtttggatataagaaagttggagaggaaacttaaaatgttctggttgaatgatgat
aaggatgtggatttgaggttggcaaggttggagcacttgatggacagaagaccagaactg
gcaaacagtgtgctgcttagacagaatccacataatgtggagcagtggcataggagggtt
aagctttttgagggtaatcccacgaagcagatattgacttacacagaagcagttaggaca
gttgaccccatgaaggctgtagggaagccacatactttatgggttgcatttgcgaagctt
tatgagacccacaaggatattgcaaatgccagggtgatttttgacaaggcggtgcaggtt
aattacaagaatgtagatcatttggctagcgtctggtgtgaatgggcggagatggaactc
agacacaaaaactttaagggtgctttggacttgatgaggcgtgcaactgcagagccatca
gttgaagtcaaacgaagagtggcagctgatggaaatgaaccagtgcagatgaagattcac
aaatccctaagactttggacattttatgttgacttggaggaaagcctgggaaccttggag
tccactcgtgcagtttatgagaggatattggatctgaggatagccacaccccaaatcata
ataaactatgctatgctgttagaggatcataagtactttgaggatgcattcaaagtttac
gagagaggtgtgaagattttcaaatatccacatgcaaaggatatatgggttacttaccta
tccaaatttgtgaagagatatggaaagtcaaaactagaacgagctcgagaattgtttgag
catgcggttgaagtggcccctgcggaggttgtaaagccattatatctacaatatgccaag
ttggaagaggactgtggtcttgcaaagagagccatgagggtttacgatcaagctacaaag
gctgttccagcagctgagaaattaagcatgtatgaaatctacatagctcgtgcagctgaa
atttttggtgttccgaaaacaagggaaatatatgaacaggcaattgaatctggtctacct
gacaaggatgtgaaggtcatgtgcctgaggtatgctgagcttgagaagagccttggagaa
gttgatcgtgctcgtgcactatacaagcatgcatcgcagtttgctgacccaagatctgac
cctgacttctggtcgaagtggcatgagtttgaagtgcagcatggtaacgaagacaccttc
cgtgagatgcttcgtgttaaaaggagcgtttctgcaagctatagccagactcactttatt
cttcctgagtacttgatgcaaaaggatcagatgcagactcttgaggaagcaaaagatgtg
ctaaagaaggctggggttgctgatgatcaaatggcagctctagaaaagaagttgttgcca
tctgctaatgatgctgtaactaaagattccaatcgcgtgcttggctttgtaagtgctggt
gtacagtctgtgggtgatggagcacctaaggatacagaaaataaggaggatgttgaacta
cccgaggaaagtgactctgaagatgatgacaaggttgagatagcacaaaaagatgttcct
aatgctgtatttggaggtctgatccggaaaagagaagagactgataaccctgaaaatggt
gatgatgctgcagcaggaaaagatgaggatgaaggtcaccttggagcccttgcaagattt
aaaagaagtcgaaacgcttaa
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