KEGG   Coffea arabica (coffee): 113726147
Entry
113726147         CDS       T11342                                 
Name
(RefSeq) UBP1-associated protein 2C-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
carb  Coffea arabica (coffee)
Pathway
carb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:carb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113726147
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:carb03019]
    113726147
   03041 Spliceosome [BR:carb03041]
    113726147
Messenger RNA biogenesis [BR:carb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     113726147
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     113726147
Spliceosome [BR:carb03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    113726147
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Nup35
Other DBs
NCBI-GeneID: 113726147
NCBI-ProteinID: XP_027105496
UniProt: A0A6P6VR16
LinkDB
Position
2c:complement(13454352..13460408)
AA seq 423 aa
MDLSKKRKTEENGGGYPAPTSLIADPNATLPPFPSPLSAEDISKILDPFTKEQLLPIIRA
AIVRHPDVLEAVRAVADSDPAQRKLFVRGLGWETNTEKLRAVFSTYGELDEAIVISDKNT
GKSKGYGFVTFKHIDAAILALKEPNKKIDGRITVTQLAAAGNSGNSQSSDVSLRKIYVGN
IPFEISSERLLSHFAMYGEIEEGPLGFDKQTGKVKGFAFFVYKTEEGARASLMEPNKVID
GHVVVCKLATDNKKMKQPQNVGPGGGMPGMPNAVPGGIPSDGSYGVHGGGYGPYGGYSGP
GLQQPPQPQQQPGMIQAPQLNAGVGGPGGFGQGTGFGGYGQGGGQYGGGGGAGSGEYGGV
GGLNSAGGGYRMPPTSGGMPTSGGYADAGNYTLSSSYPSQINPQGGGPRVPPGGMYQGMP
PYY
NT seq 1272 nt   +upstreamnt  +downstreamnt
atggatctctccaagaaacgcaaaacggaagagaacggcggcggttaccctgcgccgact
tccctcatcgccgaccccaatgcaaccctaccacctttcccgagccctttatcggcggaa
gacatcagcaaaatcctcgaccctttcactaaggaacaactccttcccatcatccgtgct
gccatcgtccgccaccccgatgtcttggaagccgtgcgtgctgtcgccgactccgacccg
gcccaaaggaaactcttcgttcgcggtctcggttgggaaaccaacaccgagaagctccgg
gctgttttctcaacttacggcgaattggatgaagctattgtcatcagcgataagaacacc
gggaagtcgaaggggtatggatttgttacctttaagcacattgatgctgctattttagcg
cttaaagaacctaataagaaaatcgatgggagaattacggttacgcagctcgctgcagcg
ggtaattcagggaattcacaatcatctgatgtgtctttgaggaagatttatgttggcaat
attccttttgagatatcctctgagaggctgttgagccattttgcaatgtatggggagatt
gaggagggcccgcttggatttgataagcagactggaaaggtcaaaggttttgcctttttt
gtttataagacggaagaaggagcgagagcttcattgatggagccaaacaaggttattgat
gggcatgtcgtggtgtgtaaattggctactgataataaaaagatgaagcagccccaaaat
gttgggcctggtggtggaatgccggggatgccgaatgccgttcctggaggaattcccagt
gatgggagttatggggttcatggtggtggatatgggccatatggagggtattctggtcct
ggattgcagcagccgccacagcctcagcaacagccagggatgattcaggctccacagctg
aatgccggggttggcgggcctgggggttttgggcaagggactggctttgggggatatggg
cagggtggcggacagtatggtggtggtggaggagcagggtctggggagtatggcggtgtt
ggtggattgaatagcgctggtggagggtacaggatgcctcccacctcaggtgggatgcca
acatctggagggtatgctgatgctgggaattatactttatcatcatcttacccatcgcag
ataaacccacaaggaggaggacctagggttccaccaggtgggatgtaccagggcatgcca
ccctactattga

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